Factsheet for PGSC0003DMT400079445

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	94.39	94.54
PGSC0003DMT400007545	Potato	cytosol	77.26	77.86
VIT_11s0016g05410.t01	Wine grape	cytosol	68.38	66.21
KRH03688	Soybean	cytosol	64.02	64.32
KRH20255	Soybean	cytosol	63.71	64.01
KRH62989	Soybean	cytosol	64.17	63.38
KRH04870	Soybean	cytosol	23.36	55.15
PGSC0003DMT400040977	Potato	nucleus	56.7	54.41
GSMUA_Achr6P05220_001	Banana	cytosol	53.12	52.14
GSMUA_Achr4P30680_001	Banana	cytosol	51.87	51.07
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	51.87	50.92
PGSC0003DMT400089433	Potato	mitochondrion	36.29	50.76
HORVU7Hr1G090240.1	Barley	cytosol	42.06	50.09
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	51.25	49.25
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	20.25	48.87
Zm00001d015778_P001	Maize	cytosol	48.91	48.83
Zm00001d053642_P001	Maize	cytosol	49.38	48.69
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	49.53	48.55
EER90022	Sorghum	cytosol, plastid	47.04	48.24
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	50.0	48.05
TraesCS7B01G278800.1	Wheat	cytosol	47.98	47.6
HORVU6Hr1G038430.3	Barley	plastid	48.29	47.47
TraesCS6D01G169200.1	Wheat	cytosol	47.98	47.46
TraesCS7A01G377500.1	Wheat	cytosol	47.82	47.3
TraesCS6B01G210700.1	Wheat	cytosol	47.82	47.3
TraesCS6A01G181900.1	Wheat	cytosol	47.82	47.3
Os02t0200900-01	Rice	cytosol	48.6	47.27
TraesCS7D01G373800.1	Wheat	cytosol	47.82	47.16
Os06t0605900-01	Rice	cytosol	44.7	45.77
PGSC0003DMT400042949	Potato	cytosol	38.94	45.29
PGSC0003DMT400094835	Potato	cytosol	17.13	44.9
HORVU5Hr1G029670.1	Barley	mitochondrion	32.4	40.55
Zm00001d036880_P003	Maize	cytosol	46.26	40.35
Zm00001d000408_P001	Maize	cytosol	46.42	40.11
HORVU5Hr1G000950.4	Barley	plastid	27.57	39.6
PGSC0003DMT400079115	Potato	cytosol	23.36	24.71
PGSC0003DMT400074998	Potato	cytosol	13.08	24.28
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	12.46	23.46
PGSC0003DMT400053176	Potato	cytosol	14.02	23.08
PGSC0003DMT400064250	Potato	mitochondrion	19.0	22.18
PGSC0003DMT400008648	Potato	cytosol	5.76	22.16
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	22.74	21.95
PGSC0003DMT400029999	Potato	cytosol	14.02	21.53
PGSC0003DMT400063732	Potato	cytosol	21.34	21.37
PGSC0003DMT400053918	Potato	cytosol	17.45	20.4
PGSC0003DMT400091765	Potato	cytosol	16.98	15.44

Protein Annotations

EntrezGene:102604327	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1D1V3	PFAM:PF00646	PFAM:PF13516
EnsemblPlantsGene:PGSC0003DMG400030928	PGSC:PGSC0003DMG400030928	EnsemblPlants:PGSC0003DMT400079445	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000296EF3B	RefSeq:XP_006358273.1	SEG:seg

Description

EIN3-binding F-box protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400030928]

Coordinates

chr7:-:4622738..4626267

Molecular Weight (calculated)

68161.7 Da

IEP (calculated)

6.860

GRAVY (calculated)

0.163

Length

642 amino acids

Sequence
(BLAST)

001: MSTLVNYSGD NEFYSGGSLC SADLGLMLAL GHADIYCPVS KRARISGPFV VEERTKNPSI EVLPNECLFE IFRRLEGGRE RSAAACVSKR WLMLLSNMRS
101: SDIRHTNLSA ANGASDDTKM ASADEDLEVE CDGYLTRCLE GKKATDIRLS AMAVGTSSRG GLGKLSVRGS NPVRGITNVG LSAIAHGCPS LRVLSLWDVQ
201: DVGDEGLMEI ARGCHSLEKL DLTKCPSISN KGLVAIAENC PSLTSLTIES CKNIGNEGLQ AIGRCCTKLE SLTIKDCPLV GDQAVVSLLS SGNTRLKKVK
301: LHSLNITDFS LAVIGHYGKA IIDLNLCKLG HVSPRGFWVM GAAQGLQSLA SLTVTSCIGL TNPSLEAVGK GCTNIKSMCL RECERVTDSG LVAFAQAAGS
401: LEYLLLEECD KITQTGILNA VSICSKLKSL SLVKCSGVRD LPPQASLLSP CDSLRSLSIR SCAGFGSRSL AMVGKLCPQL HHLDLSGLTR ITDAGLLPLL
501: ESSKAGLVKV NLTHCLNVTD EVVLSLARLH GETLELLNLD GCRRVTDASL VAIADNCLLL NDLDVSKCSI TDSGLAALSQ GVQLNLQVLS LSGCSMVTNK
601: SFSSLRTLGE SLIGLNLQHC NAIGSSRIEA LVEDLWRCDI LS

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.