CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 2
plastid 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94933
EES03178
EES04173
OQU90496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	EER94933	AT2G27050.1	14675533
AT2G25490.1	OQU90496	AT2G27050.1	14675533
AT2G25490.1	EER94933	AT3G20770.1	14675532
AT2G25490.1	OQU90496	AT3G20770.1	14675532
AT2G25490.1	EER94933	AT3G20770.1	14675533
AT2G25490.1	OQU90496	AT3G20770.1	14675533
AT2G25490.1	EES03178	AT3G28715.1	21798944
AT2G25490.1	EES04173	AT4G02570.1	14675533
AT5G25350.1	EER94933	AT3G20770.1	14675532
AT5G25350.1	OQU90496	AT3G20770.1	14675532
AT5G25350.1	EER94933	AT3G20770.1	14675533
AT5G25350.1	OQU90496	AT3G20770.1	14675533
AT5G25350.1	EES04173	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015778_P001	Maize	cytosol	93.28	95.02
Zm00001d053642_P001	Maize	cytosol	94.35	94.93
TraesCS6B01G210700.1	Wheat	cytosol	86.26	87.06
TraesCS6D01G169200.1	Wheat	cytosol	85.8	86.59
TraesCS6A01G181900.1	Wheat	cytosol	85.65	86.44
HORVU6Hr1G038430.3	Barley	plastid	84.27	84.53
Os02t0200900-01	Rice	cytosol	84.89	84.24
EER90022	Sorghum	cytosol, plastid	68.7	71.89
GSMUA_Achr6P05220_001	Banana	cytosol	54.2	54.28
GSMUA_Achr4P30680_001	Banana	cytosol	53.89	54.14
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	53.28	53.36
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	53.74	52.69
PGSC0003DMT400007545	Potato	cytosol	50.08	51.49
KRH03688	Soybean	cytosol	49.77	51.02
Solyc12g009560.1.1	Tomato	cytosol	49.31	50.71
KRH20255	Soybean	cytosol	49.31	50.55
VIT_11s0016g05410.t01	Wine grape	cytosol	50.69	50.08
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	48.55	49.53
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	48.09	49.14
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	49.92	48.95
VIT_04s0008g05470.t01	Wine grape	cytosol	49.62	48.73
KRH15886	Soybean	cytosol	47.63	48.45
PGSC0003DMT400040977	Potato	nucleus	49.47	48.43
Bra036542.1-P	Field mustard	cytosol	45.5	48.38
KRH62989	Soybean	cytosol	47.94	48.31
AT5G25350.1	Thale cress	cytosol	45.8	48.15
Solyc08g060810.2.1	Tomato	plastid	48.85	48.12
CDY19807	Canola	cytosol	45.04	47.89
CDX87090	Canola	cytosol	44.89	47.73
KRH05167	Soybean	cytosol	44.27	47.54
CDX80503	Canola	cytosol	44.73	47.18
AT2G25490.1	Thale cress	plastid	45.19	47.13
CDX76980	Canola	cytosol	43.05	47.08
CDX88173	Canola	cytosol	44.58	46.95
Bra034254.1-P	Field mustard	cytosol	44.43	46.78
KRH61771	Soybean	cytosol	45.34	46.7
Bra009835.1-P	Field mustard	cytosol	44.27	46.62
KRH52439	Soybean	cytosol, nucleus, peroxisome	45.19	46.4
CDY35358	Canola	cytosol	44.12	46.39
KRH04870	Soybean	cytosol	18.78	45.22
PGSC0003DMT400042949	Potato	cytosol	35.73	42.39
PGSC0003DMT400089433	Potato	mitochondrion	29.47	42.05
PGSC0003DMT400094835	Potato	cytosol	15.73	42.04
Solyc06g049010.1.1	Tomato	plastid	38.93	41.13
Solyc06g030620.1.1	Tomato	cytosol	11.91	38.81
Solyc06g030610.1.1	Tomato	cytosol	16.03	38.32
KXG30697	Sorghum	cytosol	16.95	26.3
EES04933	Sorghum	cytosol	13.74	25.79
EES08900	Sorghum	cytosol	23.21	23.94
EES09509	Sorghum	cytosol	13.44	22.8
KXG23663	Sorghum	cytosol	22.6	22.36
EES18256	Sorghum	cytosol, nucleus, plastid	12.37	21.95
KXG29052	Sorghum	plastid	21.37	21.21
EES03986	Sorghum	cytosol	12.21	21.0
KXG26667	Sorghum	plastid	14.66	20.51
EES07863	Sorghum	nucleus	21.53	20.41
OQU89081	Sorghum	cytosol	16.34	20.38
KXG22793	Sorghum	nucleus	21.53	20.26

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	EntrezGene:8071648	UniProt:C5XXK7	EnsemblPlants:EES06473
ProteinID:EES06473	ProteinID:EES06473.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF3	SMART:SM00367
EnsemblPlantsGene:SORBI_3004G083300	SUPFAM:SSF52047	SUPFAM:SSF81383	unigene:Sbi.3424	UniParc:UPI0001A85C6F	RefSeq:XP_002453497.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:6853930..6857172

Molecular Weight (calculated)

68689.8 Da

IEP (calculated)

7.450

GRAVY (calculated)

0.251

Length

655 amino acids

Sequence
(BLAST)

001: MPALYAYGDG GCLVSAPAEL SGLFCRGAVQ QRKRTLVAAS AVAVAAAAEC VRAAKKQRQQ LPLPLPSLDA LPDECLFEIL RRVPGGRGRG ASACVSRRWL
101: ALLGSIRASE LGQAAAAADT PSLPDLNEEF VMEEEDKEES PADRCAVDRV LEGKEATDVR LAAMAVVAGS RGGLEKLAVR GSHPTRGVTD QGLSAVARGS
201: PNLGSLALWD VPLITDAGLA EIAAGCPSLE RLDISRCPLI TDKGLAAVAQ GCPNLVSLTI EACSGVANEG LRAIGRSCVK LQAVNIKNCP LVGDQGISSL
301: VCSATASLAK IRLQGLNITD ASLAVIGYYG KAVTDLTLTR LATVGERGFW VMANAAGLQN LRCMSVTSCP GVTDLALASI AKFCPSLKQL CLRKCGHVSD
401: AGLKAFTESA KVFENLQLEE CNRVTLVGIL AFLLNCSQKF RALSLVKCMG IKDIGSAPAQ LPLCRSLRFL TIKDCPGFTD ASLAVVGMIC PQLEQVDLSG
501: LGEVTDNGLL PLIQSSEAGL IKVDLSGCKN ITDVAVSSLV KGHGKSLKKV SLEGCSKITD ASLFTMSESC TELAELDLSN CMVSDHGVAI LASARHLKLR
601: VLSLSGCSKV TQKSVPFLGN LGQSLEGLNL QFCNMIGNHN IASLEKQLWW CDILA

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.