Factsheet for AT2G25490.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35358	Canola	cytosol	84.87	85.55
Bra034254.1-P	Field mustard	cytosol	84.71	85.53
CDX76980	Canola	cytosol	81.53	85.48
KRH15886	Soybean	cytosol	62.58	61.02
KRH05167	Soybean	cytosol	57.64	59.34
VIT_04s0008g05470.t01	Wine grape	cytosol	62.42	58.77
AT5G25350.1	Thale cress	cytosol	57.17	57.62
KRH52439	Soybean	cytosol, nucleus, peroxisome	57.17	56.27
KRH61771	Soybean	cytosol	56.69	55.97
PGSC0003DMT400040977	Potato	nucleus	59.24	55.61
Solyc08g060810.2.1	Tomato	plastid	58.44	55.19
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	50.64	48.62
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	20.54	48.5
GSMUA_Achr6P05220_001	Banana	cytosol	50.48	48.47
Solyc06g049010.1.1	Tomato	plastid	47.45	48.06
PGSC0003DMT400042949	Potato	cytosol	42.2	48.01
GSMUA_Achr4P30680_001	Banana	cytosol	49.68	47.85
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	50.8	47.75
PGSC0003DMT400089433	Potato	mitochondrion	34.87	47.71
HORVU7Hr1G090240.1	Barley	cytosol	39.81	46.38
Zm00001d015778_P001	Maize	cytosol	47.45	46.35
PGSC0003DMT400094835	Potato	cytosol	17.83	45.71
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	48.25	45.36
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	47.13	45.19
Zm00001d053642_P001	Maize	cytosol	46.66	45.01
TraesCS7B01G278800.1	Wheat	cytosol	45.86	44.51
TraesCS6D01G169200.1	Wheat	cytosol	45.86	44.38
EER90022	Sorghum	cytosol, plastid	44.11	44.25
TraesCS7D01G373800.1	Wheat	cytosol	45.86	44.24
TraesCS6B01G210700.1	Wheat	cytosol	45.7	44.22
HORVU6Hr1G038430.3	Barley	plastid	45.86	44.1
TraesCS7A01G377500.1	Wheat	cytosol	45.54	44.07
TraesCS6A01G181900.1	Wheat	cytosol	45.54	44.07
Os06t0605900-01	Rice	cytosol	43.15	43.22
Os02t0200900-01	Rice	cytosol	44.75	42.58
Solyc06g030620.1.1	Tomato	cytosol	13.22	41.29
Solyc06g030610.1.1	Tomato	cytosol	17.04	39.05
HORVU5Hr1G029670.1	Barley	mitochondrion	31.85	38.99
HORVU5Hr1G000950.4	Barley	plastid	27.39	38.48
Zm00001d000408_P001	Maize	cytosol	44.27	37.42
Zm00001d036880_P003	Maize	cytosol	43.47	37.09
AT4G15475.1	Thale cress	cytosol	23.57	24.26
AT3G58530.1	Thale cress	cytosol	13.54	24.08
AT1G21410.1	Thale cress	cytosol	13.69	23.89
AT5G23340.1	Thale cress	cytosol	15.29	23.7
AT1G77000.1	Thale cress	cytosol	13.54	23.61
AT5G01720.1	Thale cress	vacuole	23.57	22.26
AT1G47056.1	Thale cress	cytosol, plastid	18.15	22.01
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	21.66	21.18
AT3G07550.2	Thale cress	cytosol	13.22	21.01
AT3G50080.1	Thale cress	cytosol	17.04	20.5
AT5G67250.1	Thale cress	cytosol	16.72	19.92
AT4G07400.1	Thale cress	nucleus	17.2	19.49

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	EntrezGene:817087	ProteinID:AAD20708.1
ProteinID:AEC07708.1	EMBL:AJ609238	EMBL:AK229995	EMBL:AK317560	ArrayExpress:AT2G25490	EnsemblPlantsGene:AT2G25490
RefSeq:AT2G25490	TAIR:AT2G25490	RefSeq:AT2G25490-TAIR-G	EnsemblPlants:AT2G25490.1	TAIR:AT2G25490.1	EMBL:AY072205
EMBL:AY091333	Unigene:At.24288	Symbol:EBF1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009719	GO:GO:0009723	GO:GO:0009873	GO:GO:0009987	GO:GO:0010105
GO:GO:0016567	GO:GO:0019538	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	RefSeq:NP_565597.1	PFAM:PF12937	PFAM:PF13516	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	UniProt:Q9SKK0	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI00000A04C5	SEG:seg	:	:	:

Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]

Coordinates

chr2:-:10847375..10850797

Molecular Weight (calculated)

66592.7 Da

IEP (calculated)

7.616

GRAVY (calculated)

0.208

Length

628 amino acids

Sequence
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.