Factsheet for AT4G07400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008648	Potato	cytosol	18.59	61.68
Solyc04g078490.1.1	Tomato	cytosol	57.76	59.93
VIT_18s0001g09940.t01	Wine grape	plastid	58.12	59.52
KRH15408	Soybean	plastid	57.76	58.29
AT1G47056.1	Thale cress	cytosol, plastid	53.97	57.72
KRH05631	Soybean	plastid	56.68	55.77
AT5G67250.1	Thale cress	cytosol	51.26	53.89
GSMUA_Achr3P28280_001	Banana	plastid	46.93	52.74
AT3G50080.1	Thale cress	cytosol	48.01	50.96
GSMUA_Achr4P12920_001	Banana	plastid	45.67	49.51
GSMUA_Achr9P11380_001	Banana	cytosol	38.45	47.54
GSMUA_Achr9P22570_001	Banana	plastid	37.36	47.05
GSMUA_Achr2P05250_001	Banana	cytosol	41.16	46.91
GSMUA_Achr8P15580_001	Banana	cytosol	34.12	46.32
OQU89081	Sorghum	cytosol	43.32	45.71
Os04t0505700-01	Rice	cytosol, mitochondrion	33.94	45.3
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	35.74	44.9
KXG26667	Sorghum	plastid	37.73	44.66
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	42.42	44.59
TraesCS5A01G161400.1	Wheat	cytosol, plastid	42.42	44.59
Zm00001d019677_P001	Maize	cytosol	42.24	44.57
TraesCS5B01G158800.1	Wheat	plastid	42.24	44.4
Zm00001d003103_P001	Maize	plastid	41.52	44.23
HORVU5Hr1G050420.1	Barley	plastid	42.24	42.39
PGSC0003DMT400091765	Potato	cytosol	53.97	42.35
Zm00001d025808_P001	Maize	plastid	41.16	41.76
TraesCS2A01G359900.1	Wheat	cytosol	40.61	41.59
Zm00001d025812_P001	Maize	plastid	40.97	41.58
HORVU0Hr1G005070.1	Barley	plastid	41.16	40.86
GSMUA_Achr9P18840_001	Banana	plastid	45.67	34.66
AT5G23340.1	Thale cress	cytosol	16.61	22.72
AT3G07550.2	Thale cress	cytosol	13.36	18.73
AT5G25350.1	Thale cress	cytosol	20.04	17.82
AT4G15475.1	Thale cress	cytosol	19.31	17.54
AT2G25490.1	Thale cress	plastid	19.49	17.2
AT1G77000.1	Thale cress	cytosol	10.65	16.39
AT5G01720.1	Thale cress	vacuole	19.49	16.24
AT1G21410.1	Thale cress	cytosol	10.47	16.11
AT3G58530.1	Thale cress	cytosol	10.11	15.86
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	18.23	15.73
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.05	12.61
Zm00001d037295_P001	Maize	mitochondrion	5.23	11.89
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	4.69	11.16

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EntrezGene:826171	ProteinID:AAD48947.1	ProteinID:AEE82565.1
ArrayExpress:AT4G07400	EnsemblPlantsGene:AT4G07400	RefSeq:AT4G07400	TAIR:AT4G07400	RefSeq:AT4G07400-TAIR-G	EnsemblPlants:AT4G07400.1
TAIR:AT4G07400.1	Unigene:At.66608	ProteinID:CAB81110.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	RefSeq:NP_567316.1
PFAM:PF12937	PFAM:PF13516	PO:PO:0000037	PO:PO:0000084	PO:PO:0000293	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007115	PO:PO:0007611	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009031	PO:PO:0009046
PO:PO:0009047	PO:PO:0020100	PO:PO:0025022	PFscan:PS50181	PANTHER:PTHR44356	PANTHER:PTHR44356:SF2
UniProt:Q9S9X4	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000009F210
Symbol:VFB3	SEG:seg	:	:	:	:

Description

FBL8Putative F-box/LRR-repeat protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9X4]

Coordinates

chr4:-:4197666..4199511

Molecular Weight (calculated)

61009.0 Da

IEP (calculated)

9.769

GRAVY (calculated)

-0.081

Length

554 amino acids

Sequence
(BLAST)

001: MNIYIFSKEK KRKKVVCDNL SKTRGSRREH CEPHRRRMGQ STSKFRRSKT TFTSPVLPNL REQNSGADEP YDYISNLPDE CLSLIFQSLT CADLKRCSLV
101: CRRWLTIEGQ CRHRLSLKAQ SDLISVIPSL FTRFDSVTKL VLRSDRRSLG ICDNAFVMIS VRCRNLTRLK LRGCPEISDL GIIGFTENCR SLKKVSFGSC
201: GFGVKGMNAL LNTCLGLEEL SVKRLRGIGA GAELIGPGGA AGSLKVICLK ELHNGQCFAP LLSGAKGLRI LKIFRCSGDW DRVFEAVRDK VNAIVEIHLE
301: RIQMSDLGLT ALSKCSGVEV LHLVKTPDCT NVGLALVAER CKLLRKLHID GWKTNRIGDE GLIVVAKYCW NLQELVLIGV NPTKLSLEAI VSNCLNLERL
401: ALCGSDTVGD TELCCIAEKC LALRKLCIKN CPITDDGIKA LGNGCPNLLK VKVKKCRGVT TQGADLLRKR RALLVVNLDA PETPIVEGSV GEGGAQENAV
501: EFPPSRLQIP TIGLASGSTS RSSSFKLRLG FLSQRNFVSC ALRRLGSRSR SRNE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.