Factsheet for GSMUA_Achr3P28280_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P22570_001	Banana	plastid	68.97	77.27
GSMUA_Achr4P12920_001	Banana	plastid	78.9	76.13
GSMUA_Achr9P11380_001	Banana	cytosol	52.74	58.04
GSMUA_Achr2P05250_001	Banana	cytosol	57.0	57.82
GSMUA_Achr8P15580_001	Banana	cytosol	46.45	56.13
PGSC0003DMT400008648	Potato	cytosol	18.66	55.09
VIT_18s0001g09940.t01	Wine grape	plastid	59.43	54.16
KRH15408	Soybean	plastid	60.04	53.92
Solyc04g078490.1.1	Tomato	cytosol	57.2	52.81
KRH05631	Soybean	plastid	59.03	51.69
CDY43846	Canola	plastid	52.13	50.0
AT1G47056.1	Thale cress	cytosol, plastid	52.54	50.0
Bra032213.1-P	Field mustard	plastid	52.13	50.0
CDY25663	Canola	plastid	51.72	49.61
AT5G67250.1	Thale cress	cytosol	52.33	48.96
Solyc02g092990.1.1	Tomato	plastid	54.36	48.73
PGSC0003DMT400064250	Potato	mitochondrion	54.36	48.73
VIT_07s0129g01110.t01	Wine grape	plastid	54.77	47.96
Solyc03g044220.1.1	Tomato	cytosol	53.35	47.91
PGSC0003DMT400053918	Potato	cytosol	52.94	47.54
CDX81326	Canola	cytosol	50.51	47.52
KRH28425	Soybean	cytosol	50.51	47.34
KRH77049	Soybean	cytosol	49.7	46.93
AT4G07400.1	Thale cress	nucleus	52.74	46.93
CDY18646	Canola	cytosol	49.7	46.76
Bra037120.1-P	Field mustard	cytosol	49.7	46.58
Bra029994.1-P	Field mustard	cytosol	47.87	46.18
CDX68575	Canola	cytosol	47.26	45.6
AT3G50080.1	Thale cress	cytosol	48.28	45.59
CDX83114	Canola	cytosol	45.84	45.47
KRH04530	Soybean	cytosol	49.49	45.27
KRH57971	Soybean	cytosol	50.3	44.36
KRH52037	Soybean	cytosol	32.45	39.6
GSMUA_Achr9P18840_001	Banana	plastid	58.01	39.18
PGSC0003DMT400091765	Potato	cytosol	52.54	36.69
CDY01426	Canola	cytosol	51.52	23.45
CDY12824	Canola	nucleus	51.12	23.12
KRH61346	Soybean	cytosol	29.82	21.06
GSMUA_Achr2P17760_001	Banana	cytosol	12.98	18.08
GSMUA_Achr5P19410_001	Banana	cytosol	15.42	17.88
GSMUA_Achr10P...	Banana	cytosol	12.78	17.75
GSMUA_Achr8P28940_001	Banana	cytosol	13.59	17.63
GSMUA_Achr6P18620_001	Banana	cytosol	12.98	17.44
GSMUA_AchrUn_...	Banana	cytosol	12.98	17.39
GSMUA_Achr4P30680_001	Banana	cytosol	22.31	16.87
GSMUA_Achr6P05220_001	Banana	cytosol	22.11	16.67
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	22.11	16.67
GSMUA_Achr8P13910_001	Banana	mitochondrion	11.76	16.38
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	21.1	15.57
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	22.52	15.55
GSMUA_Achr3P22880_001	Banana	cytosol	19.88	15.31
GSMUA_Achr7P22290_001	Banana	cytosol	21.7	14.94
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	19.88	14.67
GSMUA_Achr6P20450_001	Banana	cytosol	19.27	14.39
GSMUA_Achr11P...	Banana	cytosol	18.66	14.02

Protein Annotations

MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr3G28280_001	EnsemblPlants:GSMUA_Achr3P28280_001	EnsemblPlants:GSMUA_Achr3T28280_001	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0SIJ4	PFAM:PF00646	PFAM:PF13516
PANTHER:PTHR44356	PANTHER:PTHR44356:SF2	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI000294CCB4	SEG:seg

Description

F-box protein At1g47056 [Source:GMGC_GENE;Acc:GSMUA_Achr3G28280_001]

Coordinates

chr3:+:27608714..27610855

Molecular Weight (calculated)

52501.8 Da

IEP (calculated)

8.615

GRAVY (calculated)

0.013

Length

493 amino acids

Sequence
(BLAST)

001: MGQSASTPSP TSFSSSSSRR VKPLSSCSSA VPASAAKELA VMTNGDAASG SGAVCPSRDH TLDLPDECLA LVFQSLGSGD RKRCSLVCRR WLAIALIAAR
101: CPNLTRLKLR ACRTVTDAGM AAVADHCPSL RKLSVGSCTF GSKGIEAVVR GCALLEELSI KRLRGLPDAT VIGNVVVKAA SLRSVCLKEL YNGQCFSRLI
201: AGSSNLKTLK LIRCSGDWDR LLEDVANKVP GIIEIHLEKL QVSDRGLSAL SSCANLEILH LVKTPECTDA GLSSVAERCH LLRKVHIDGW KTNRIGDEGL
301: IVIAKQCPNL QELVLIGVNP TARSLGLIAS NCRNLERLAL CGSETFGDAE ITCIASKCMA LKKLCIKGCP VSDQGMEALV GGCPKLVKVK VKKCRGVTPG
401: CADWLMTCRD GMLAVNLDIT GPNEPQEASV GESRIIESNE QLVDQIGAVE LLPSSSTSRP SPWKTRMGYY AGRNFVASAL RRWSHGSSNS NHT

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.