Factsheet for GSMUA_Achr4P12920_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P28280_001	Banana	plastid	76.13	78.9
GSMUA_Achr9P22570_001	Banana	plastid	62.62	72.73
GSMUA_Achr2P05250_001	Banana	cytosol	54.4	57.2
GSMUA_Achr9P11380_001	Banana	cytosol	48.53	55.36
PGSC0003DMT400008648	Potato	cytosol	18.0	55.09
GSMUA_Achr8P15580_001	Banana	cytosol	43.05	53.92
VIT_18s0001g09940.t01	Wine grape	plastid	55.97	52.87
Solyc04g078490.1.1	Tomato	cytosol	53.82	51.5
KRH15408	Soybean	plastid	55.19	51.37
CDY43846	Canola	plastid	50.1	49.81
CDY25663	Canola	plastid	50.1	49.81
Bra032213.1-P	Field mustard	plastid	50.1	49.81
KRH05631	Soybean	plastid	54.21	49.2
AT1G47056.1	Thale cress	cytosol, plastid	49.32	48.65
AT5G67250.1	Thale cress	cytosol	47.75	46.3
Solyc02g092990.1.1	Tomato	plastid	49.71	46.18
PGSC0003DMT400064250	Potato	mitochondrion	49.51	46.0
CDX81326	Canola	cytosol	47.16	45.99
AT4G07400.1	Thale cress	nucleus	49.51	45.67
CDY18646	Canola	cytosol	46.77	45.61
Bra037120.1-P	Field mustard	cytosol	46.77	45.44
Solyc03g044220.1.1	Tomato	cytosol	48.53	45.17
PGSC0003DMT400053918	Potato	cytosol	48.14	44.81
KRH28425	Soybean	cytosol	45.79	44.49
VIT_07s0129g01110.t01	Wine grape	plastid	48.73	44.23
KRH77049	Soybean	cytosol	45.01	44.06
Bra029994.1-P	Field mustard	cytosol	43.84	43.84
KRH04530	Soybean	cytosol	46.18	43.78
AT3G50080.1	Thale cress	cytosol	44.23	43.3
CDX68575	Canola	cytosol	43.25	43.25
CDX83114	Canola	cytosol	41.88	43.06
KRH57971	Soybean	cytosol	46.97	42.93
GSMUA_Achr9P18840_001	Banana	plastid	57.14	40.0
KRH52037	Soybean	cytosol	29.94	37.87
PGSC0003DMT400091765	Potato	cytosol	50.29	36.4
CDY01426	Canola	cytosol	48.92	23.08
CDY12824	Canola	nucleus	48.53	22.75
KRH61346	Soybean	cytosol	27.98	20.49
GSMUA_Achr2P17760_001	Banana	cytosol	12.33	17.8
GSMUA_Achr5P19410_001	Banana	cytosol	14.48	17.41
GSMUA_Achr8P28940_001	Banana	cytosol	12.72	17.11
GSMUA_Achr10P...	Banana	cytosol	11.55	16.62
GSMUA_AchrUn_...	Banana	cytosol	11.94	16.58
GSMUA_Achr6P18620_001	Banana	cytosol	11.74	16.35
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	22.31	15.97
GSMUA_Achr4P30680_001	Banana	cytosol	19.57	15.34
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	19.57	15.29
GSMUA_Achr8P13910_001	Banana	mitochondrion	10.57	15.25
GSMUA_Achr7P22290_001	Banana	cytosol	20.94	14.94
GSMUA_Achr6P05220_001	Banana	cytosol	18.98	14.83
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	18.98	14.52
GSMUA_Achr3P22880_001	Banana	cytosol	18.0	14.38
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	18.59	14.22
GSMUA_Achr6P20450_001	Banana	cytosol	17.81	13.79
GSMUA_Achr11P...	Banana	cytosol	16.63	12.96

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr4G12920_001
EnsemblPlants:GSMUA_Achr4P12920_001	EnsemblPlants:GSMUA_Achr4T12920_001	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0SNF7	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44356
PANTHER:PTHR44356:SF2	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	TMHMM:TMhelix	UniParc:UPI000296B43F
SEG:seg	:	:	:	:	:

Description

Putative F-box/LRR-repeat protein 8 [Source:GMGC_GENE;Acc:GSMUA_Achr4G12920_001]

Coordinates

chr4:-:9625950..9627948

Molecular Weight (calculated)

54382.8 Da

IEP (calculated)

8.161

GRAVY (calculated)

0.066

Length

511 amino acids

Sequence
(BLAST)

001: MGQSASIPSI KVLSSSSSSS RRAKLPSAAT AAWRSVAMTE GDAASGDGDA APARNNTEDL PDECLALVFQ SLGSGDRKRC SLVCRRWLAV EGQSRHRLAL
101: DARAALLEAA PAIFARFDAH CRGLRKLSVG SCAFGFKGVE AVVRGCSALE ELSIKRLRGL PDVTAAGNAI VGSASLRSVC LKELYNGQCF APLIAGSSNL
201: KALKLIRCSG DWDRLLADIA AKVPGIVEIH LEKLQVSDRG LAALSFCADL EILHLVKTPE CTDAGLATVA ERCHLLRKIH IDGWKTNRIG DEGLIIVARQ
301: CPNLQELVLI GVNPTARSLG LIASNCHNLE RLALCGSDTF GDAEITCIAS KCMALKKLCI KGCPVSDQGM EALAEGCPKL VKVKVKKCRG VTPGCADWLM
401: QCRDGMLAVN LDTAGPVEQP EGSVGESGNL ENNEQLIDQI GAVDLLPSSS SSRSSPWKTR MGLYAGRNFV ASALRRWSHG SSNSNHTLHG YYLSFMAFCL
501: STTICIGTLL F

Best Arabidopsis Sequence Match ( AT4G07400.1 )
(BLAST)

001: MNIYIFSKEK KRKKVVCDNL SKTRGSRREH CEPHRRRMGQ STSKFRRSKT TFTSPVLPNL REQNSGADEP YDYISNLPDE CLSLIFQSLT CADLKRCSLV
101: CRRWLTIEGQ CRHRLSLKAQ SDLISVIPSL FTRFDSVTKL VLRSDRRSLG ICDNAFVMIS VRCRNLTRLK LRGCPEISDL GIIGFTENCR SLKKVSFGSC
201: GFGVKGMNAL LNTCLGLEEL SVKRLRGIGA GAELIGPGGA AGSLKVICLK ELHNGQCFAP LLSGAKGLRI LKIFRCSGDW DRVFEAVRDK VNAIVEIHLE
301: RIQMSDLGLT ALSKCSGVEV LHLVKTPDCT NVGLALVAER CKLLRKLHID GWKTNRIGDE GLIVVAKYCW NLQELVLIGV NPTKLSLEAI VSNCLNLERL
401: ALCGSDTVGD TELCCIAEKC LALRKLCIKN CPITDDGIKA LGNGCPNLLK VKVKKCRGVT TQGADLLRKR RALLVVNLDA PETPIVEGSV GEGGAQENAV
501: EFPPSRLQIP TIGLASGSTS RSSSFKLRLG FLSQRNFVSC ALRRLGSRSR SRNE

Arabidopsis Description

FBL8Putative F-box/LRR-repeat protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9X4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.