CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15408	Soybean	plastid	88.81	91.07
VIT_18s0001g09940.t01	Wine grape	plastid	67.32	70.06
Solyc04g078490.1.1	Tomato	cytosol	64.3	67.79
AT1G47056.1	Thale cress	cytosol, plastid	58.44	63.51
Bra032213.1-P	Field mustard	plastid	56.13	61.48
CDY43846	Canola	plastid	56.13	61.48
CDY25663	Canola	plastid	55.95	61.28
PGSC0003DMT400008648	Potato	cytosol	17.58	59.28
GSMUA_Achr3P28280_001	Banana	plastid	51.69	59.03
AT4G07400.1	Thale cress	nucleus	55.77	56.68
KRH28425	Soybean	cytosol	52.4	56.08
GSMUA_Achr9P22570_001	Banana	plastid	43.16	55.23
KRH77049	Soybean	cytosol	51.15	55.17
GSMUA_Achr4P12920_001	Banana	plastid	49.2	54.21
GSMUA_Achr2P05250_001	Banana	cytosol	45.47	52.67
GSMUA_Achr9P11380_001	Banana	cytosol	41.03	51.56
GSMUA_Achr8P15580_001	Banana	cytosol	37.12	51.23
KRH04530	Soybean	cytosol	48.85	51.02
TraesCS5A01G161400.1	Wheat	cytosol, plastid	47.6	50.85
TraesCS5B01G158800.1	Wheat	plastid	47.6	50.85
OQU89081	Sorghum	cytosol	47.25	50.67
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	47.42	50.66
Zm00001d019677_P001	Maize	cytosol	46.36	49.71
HORVU5Hr1G050420.1	Barley	plastid	47.96	48.91
KRH57971	Soybean	cytosol	48.49	48.84
PGSC0003DMT400091765	Potato	cytosol	60.92	48.58
KRH52037	Soybean	cytosol	34.81	48.51
Os04t0505700-01	Rice	cytosol, mitochondrion	35.52	48.19
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	36.77	46.94
KXG26667	Sorghum	plastid	38.9	46.79
Zm00001d003103_P001	Maize	plastid	42.98	46.54
Zm00001d025812_P001	Maize	plastid	42.98	44.32
Zm00001d025808_P001	Maize	plastid	42.81	44.14
TraesCS2A01G359900.1	Wheat	cytosol	41.39	43.07
HORVU0Hr1G005070.1	Barley	plastid	41.21	41.58
GSMUA_Achr9P18840_001	Banana	plastid	48.13	37.12
KRH61346	Soybean	cytosol	31.62	25.5
KRH36149	Soybean	cytosol	15.63	21.0
KRH02152	Soybean	cytosol	21.67	20.89
KRG90608	Soybean	cytosol	15.45	20.81
KRH11333	Soybean	cytosol	14.21	20.46
KRH20947	Soybean	cytosol, nucleus, peroxisome	21.14	19.6
KRH05167	Soybean	cytosol	20.96	19.34
KRH38032	Soybean	cytosol	12.97	19.31
KRH15886	Soybean	cytosol	21.85	19.1
KRH03688	Soybean	cytosol	21.67	19.09
KRH20255	Soybean	cytosol	21.67	19.09
KRH50979	Soybean	cytosol	11.9	19.09
KRH61771	Soybean	cytosol	21.49	19.03
KRH16153	Soybean	cytosol	8.35	18.95
KRH47976	Soybean	cytosol	12.97	18.81
KRH62989	Soybean	cytosol	21.67	18.77
KRH52439	Soybean	cytosol, nucleus, peroxisome	21.14	18.65
KRH64574	Soybean	cytosol	10.12	17.76
KRH18090	Soybean	cytosol	11.72	17.6
KRH15905	Soybean	cytosol	11.37	17.25
KRH53355	Soybean	cytosol	11.01	16.67
KRH68483	Soybean	cytosol	18.47	16.22
KRH76059	Soybean	cytosol, nucleus, peroxisome	19.18	16.1
KRG96764	Soybean	cytosol	18.29	16.07
KRH65525	Soybean	cytosol, peroxisome, plastid	19.36	15.4
KRH17127	Soybean	cytosol	17.76	15.34
KRH72766	Soybean	cytosol	14.39	15.06
KRH04870	Soybean	cytosol	6.75	13.97
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.51	13.96
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.33	12.88
Zm00001d037295_P001	Maize	mitochondrion	5.51	12.7

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100806231	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EMBL:ACUP02010765	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_17G238700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1MXL0
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRH05631	ProteinID:KRH05631	ProteinID:KRH05631.1
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PFAM:PF13516	PFscan:PS50181
PANTHER:PTHR44356	PANTHER:PTHR44356:SF2	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI000233E682	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:39424740..39427127

Molecular Weight (calculated)

60272.5 Da

IEP (calculated)

8.725

GRAVY (calculated)

-0.094

Length

563 amino acids

Sequence
(BLAST)

001: MGQSVSSAAV ASRRERDQGH RSVNSSKTRF TASVSPMAGY SSGAAEEGEN HRVEAVADES TDYISDLPNE CLASVFQFLS SADRSRCSLV CRRWLQIEGQ
101: SRHRLSLNAE LDLFPAIPSL FSRFDSVTKL ALKCDRRSVS IRDDALVLIS QRCPNLTRLK LRACRELTDA GMEAFAKNCK GLKKLSCGSC TFGSKGMNAV
201: LDNCAALEEL SVKRLRGIAD TAAAEPIGPG VAAASLKTVC LKELYNGQCF GTLILGAKNL KTLKLFRCSG DWDRLFQLLV DRVTKIVEVH LERLQISDVG
301: LQAIANYSSL EILHLVKTPE CSDIGLVAIA DRCKLLRKLH IDGWKANRIG DEGLIAVAKG CPNLLELVLI GVNPTKASLE MLASNCQNLE RLALCGSDSV
401: GDPEISCIAA KCVALKKLCI KSCPVSDQGM EALGNGCPNL VKVKVKKCKG VTPEGGDWLR RTRGSVAVNL DTGEAELQEA SASDGGAQDN GVEFPQMPAQ
501: IAAASSSTRS SSSRFALMSA RISAAALRST RSGSSRLGLL PTRISAASTF RRWSGGSTSA RHG

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.