CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11333	Soybean	cytosol	57.5	89.26
KRH02152	Soybean	cytosol	78.25	81.34
VIT_05s0020g02400.t01	Wine grape	cytosol	74.79	74.3
PGSC0003DMT400079115	Potato	cytosol	71.5	71.5
KRH50979	Soybean	cytosol	41.19	71.23
Solyc06g054440.2.1	Tomato	mitochondrion	62.11	70.47
AT4G15475.1	Thale cress	cytosol	66.56	66.23
CDX90588	Canola	cytosol	65.24	62.96
CDY09760	Canola	cytosol	64.91	62.84
Bra012785.1-P	Field mustard	cytosol	64.74	62.58
GSMUA_Achr3P22880_001	Banana	cytosol	63.26	60.0
TraesCS4D01G148000.1	Wheat	cytosol	50.08	48.64
Zm00001d007640_P001	Maize	cytosol	50.08	48.41
EES08900	Sorghum	cytosol	49.42	47.24
TraesCS4A01G142500.3	Wheat	plastid	47.45	45.79
Os11t0641200-01	Rice	cytosol	25.37	43.02
Os10t0148800-01	Rice	cytosol	27.35	33.33
KRG90608	Soybean	cytosol	19.28	27.99
KRH36149	Soybean	cytosol	19.28	27.92
KRH68483	Soybean	cytosol	29.0	27.46
KRG96764	Soybean	cytosol	28.83	27.3
KRH16153	Soybean	cytosol	10.54	25.81
KRH47976	Soybean	cytosol	16.47	25.77
KRH17127	Soybean	cytosol	26.36	24.54
KRH64574	Soybean	cytosol	12.85	24.3
KRH76059	Soybean	cytosol, nucleus, peroxisome	26.52	23.99
KRH15905	Soybean	cytosol	14.5	23.72
KRH72766	Soybean	cytosol	20.92	23.61
KRH65525	Soybean	cytosol, peroxisome, plastid	27.51	23.59
KRH18090	Soybean	cytosol	14.5	23.47
KRH15886	Soybean	cytosol	24.88	23.45
KRH05167	Soybean	cytosol	23.23	23.11
KRH20255	Soybean	cytosol	24.22	23.0
KRH03688	Soybean	cytosol	23.89	22.69
KRH53355	Soybean	cytosol	13.84	22.58
KRH38032	Soybean	cytosol	14.0	22.49
KRH62989	Soybean	cytosol	23.89	22.31
KRH15408	Soybean	plastid	20.1	22.22
KRH52439	Soybean	cytosol, nucleus, peroxisome	23.23	22.1
KRH61771	Soybean	cytosol	23.06	22.01
KRH04530	Soybean	cytosol	19.44	21.89
KRH77049	Soybean	cytosol	18.45	21.46
KRH28425	Soybean	cytosol	18.45	21.29
KRH05631	Soybean	plastid	19.6	21.14
KRH52037	Soybean	cytosol	14.0	21.04
KRH57971	Soybean	cytosol	19.28	20.93
KRH04870	Soybean	cytosol	8.4	18.75
KRH61346	Soybean	cytosol	12.36	10.74

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100816140	Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02008330	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_13G211600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	UniProt:K7M0Y5	EnsemblPlants:KRH20947	ProteinID:KRH20947	ProteinID:KRH20947.1
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PFAM:PF13516	PANTHER:PTHR45517
SMART:SM00367	SMART:SM00368	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000233BF22	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:32521798..32528269

Molecular Weight (calculated)

65435.0 Da

IEP (calculated)

7.587

GRAVY (calculated)

0.192

Length

607 amino acids

Sequence
(BLAST)

001: MRGHDWINTL LPDELLIEIF RRLDSKSNRD ASSLVCTRWL RLERLTRAAI RIGASGSPDL LIHLLAARFS NITTVHIDER LSVSIPAHLG RRRSSGNSSV
101: KLHDVNDKHG SASDQSDLDS LCLSDSGLAS LAEGFPKLEK LRLIWCSNVT SEGLSSLARK CTSLKSLDLQ GCYVGDQGLA AIGQCCKQLE DLNLRFCEGL
201: TDNGLVELAL GVGNALKSLG VAACAKITDV SMEVVGSQCR SLETLSLDSE FIHNKGVLAV IKGCPHLKVL KLQCINLTDD TLNVAGTSCL SLELLALYSF
301: QRFTDKGLCA IGNGCKKLKN LTLSDCYFLS DKGLEVIATG CKELTHLEVN GCHNIGTLGL ESVGKSCQHL SELALLYCQR IGDAGLVQVG QGCKFLQALQ
401: LVDCSSIGDE AMCGIASGCR NLKKLHIRRC YEIGNKGIIA VGEKCKLLTD LSIRFCDRVG DRALIAIAEG CSLHYLNVSG CHLIGDAGVI AIARGCPQLC
501: YLDVSVLQKL GDIAMAELGE HCPLLKEIVL SHCRQITDVG LAHLVKGCCT VLESCHMVYC SGVTSVGVAT VVSSCPNIKK VLVEKWKVSQ RTQRRVGSVI
601: SYLCMDL

Best Arabidopsis Sequence Match ( AT4G15475.1 )
(BLAST)

001: MRGHDRINNC LPEELILEIF RRLESKPNRD ACSLVCKRWL SLERFSRTTL RIGASFSPDD FISLLSRRFL YITSIHVDER ISVSLPSLSP SPKRKRGRDS
101: SSPSSSKRKK LTDKTHSGAE NVESSSLTDT GLTALANGFP RIENLSLIWC PNVSSVGLCS LAQKCTSLKS LDLQGCYVGD QGLAAVGKFC KQLEELNLRF
201: CEGLTDVGVI DLVVGCSKSL KSIGVAASAK ITDLSLEAVG SHCKLLEVLY LDSEYIHDKG LIAVAQGCHR LKNLKLQCVS VTDVAFAAVG ELCTSLERLA
301: LYSFQHFTDK GMRAIGKGSK KLKDLTLSDC YFVSCKGLEA IAHGCKELER VEINGCHNIG TRGIEAIGKS CPRLKELALL YCQRIGNSAL QEIGKGCKSL
401: EILHLVDCSG IGDIAMCSIA KGCRNLKKLH IRRCYEIGNK GIISIGKHCK SLTELSLRFC DKVGNKALIA IGKGCSLQQL NVSGCNQISD AGITAIARGC
501: PQLTHLDISV LQNIGDMPLA ELGEGCPMLK DLVLSHCHHI TDNGLNHLVQ KCKLLETCHM VYCPGITSAG VATVVSSCPH IKKVLIEKWK VTERTTRRAG
601: SVISYLCMDL

Arabidopsis Description

FBL4F-box/LRR-repeat protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.