Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH15886 | Soybean | cytosol | 92.46 | 87.58 |
| KRH52439 | Soybean | cytosol, nucleus, peroxisome | 70.0 | 66.93 |
| KRH61771 | Soybean | cytosol | 69.67 | 66.82 |
| VIT_04s0008g05470.t01 | Wine grape | cytosol | 67.87 | 62.07 |
| AT2G25490.1 | Thale cress | plastid | 59.34 | 57.64 |
| KRH03688 | Soybean | cytosol | 60.0 | 57.28 |
| KRH20255 | Soybean | cytosol | 59.51 | 56.81 |
| PGSC0003DMT400040977 | Potato | nucleus | 62.13 | 56.65 |
| CDY35358 | Canola | cytosol | 57.54 | 56.34 |
| Bra034254.1-P | Field mustard | cytosol | 57.38 | 56.27 |
| Solyc08g060810.2.1 | Tomato | plastid | 60.98 | 55.94 |
| CDX76980 | Canola | cytosol | 54.92 | 55.93 |
| KRH62989 | Soybean | cytosol | 59.51 | 55.85 |
| AT5G25350.1 | Thale cress | cytosol | 55.57 | 54.41 |
| CDX87090 | Canola | cytosol | 54.59 | 54.06 |
| CDX80503 | Canola | cytosol | 54.59 | 53.62 |
| CDX88173 | Canola | cytosol | 54.59 | 53.54 |
| Bra036542.1-P | Field mustard | cytosol | 53.93 | 53.41 |
| Bra009835.1-P | Field mustard | cytosol | 54.26 | 53.22 |
| CDY19807 | Canola | cytosol | 53.61 | 53.08 |
| PGSC0003DMT400094835 | Potato | cytosol | 21.31 | 53.06 |
| GSMUA_Achr9P28510_001 | Banana | cytosol, nucleus, peroxisome | 52.13 | 48.62 |
| PGSC0003DMT400089433 | Potato | mitochondrion | 36.56 | 48.58 |
| GSMUA_Achr4P30680_001 | Banana | cytosol | 51.48 | 48.16 |
| PGSC0003DMT400042949 | Potato | cytosol | 43.28 | 47.83 |
| HORVU1Hr1G089690.1 | Barley | cytosol, extracellular, mitochondrion | 20.82 | 47.74 |
| Solyc06g049010.1.1 | Tomato | plastid | 48.2 | 47.42 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 51.48 | 47.01 |
| GSMUA_Achr6P05220_001 | Banana | cytosol | 50.33 | 46.94 |
| Solyc06g030610.1.1 | Tomato | cytosol | 20.98 | 46.72 |
| Solyc06g030620.1.1 | Tomato | cytosol | 15.25 | 46.27 |
| HORVU7Hr1G090240.1 | Barley | cytosol | 39.67 | 44.9 |
| Zm00001d015778_P001 | Maize | cytosol | 47.05 | 44.63 |
| GSMUA_Achr2P15920_001 | Banana | cytosol, peroxisome, plastid | 48.85 | 44.61 |
| TraesCS6A01G181900.1 | Wheat | cytosol | 47.38 | 44.53 |
| TraesCS6B01G210700.1 | Wheat | cytosol | 47.38 | 44.53 |
| Zm00001d053642_P001 | Maize | cytosol | 47.38 | 44.39 |
| TraesCS6D01G169200.1 | Wheat | cytosol | 47.21 | 44.38 |
| EES06473 | Sorghum | cytosol, peroxisome, plasma membrane | 47.54 | 44.27 |
| HORVU6Hr1G038430.3 | Barley | plastid | 47.05 | 43.95 |
| EER90022 | Sorghum | cytosol, plastid | 45.08 | 43.93 |
| Os02t0200900-01 | Rice | cytosol | 47.38 | 43.79 |
| TraesCS7B01G278800.1 | Wheat | cytosol | 46.23 | 43.59 |
| TraesCS7D01G373800.1 | Wheat | cytosol | 46.39 | 43.47 |
| TraesCS7A01G377500.1 | Wheat | cytosol | 46.07 | 43.3 |
| Os06t0605900-01 | Rice | cytosol | 43.61 | 42.42 |
| KRH04870 | Soybean | cytosol | 18.36 | 41.18 |
| HORVU5Hr1G000950.4 | Barley | plastid | 28.52 | 38.93 |
| HORVU5Hr1G029670.1 | Barley | mitochondrion | 32.46 | 38.6 |
| Zm00001d000408_P001 | Maize | cytosol | 44.43 | 36.47 |
| Zm00001d036880_P003 | Maize | cytosol | 43.77 | 36.28 |
| KRH50979 | Soybean | cytosol | 14.59 | 25.36 |
| KRH36149 | Soybean | cytosol | 17.21 | 25.06 |
| KRH11333 | Soybean | cytosol | 15.9 | 24.81 |
| KRG90608 | Soybean | cytosol | 16.89 | 24.64 |
| KRH64574 | Soybean | cytosol | 12.95 | 24.61 |
| KRH16153 | Soybean | cytosol | 9.84 | 24.19 |
| KRH15905 | Soybean | cytosol | 14.59 | 23.99 |
| KRH18090 | Soybean | cytosol | 14.59 | 23.73 |
| KRH53355 | Soybean | cytosol | 14.43 | 23.66 |
| KRH52037 | Soybean | cytosol | 15.41 | 23.27 |
| KRH20947 | Soybean | cytosol, nucleus, peroxisome | 23.11 | 23.23 |
| KRH47976 | Soybean | cytosol | 14.75 | 23.2 |
| KRH02152 | Soybean | cytosol | 21.64 | 22.6 |
| KRH38032 | Soybean | cytosol | 13.93 | 22.49 |
| KRH04530 | Soybean | cytosol | 19.84 | 22.45 |
| KRH15408 | Soybean | plastid | 20.0 | 22.22 |
| KRH57971 | Soybean | cytosol | 20.0 | 21.82 |
| KRH72766 | Soybean | cytosol | 19.18 | 21.75 |
| KRG96764 | Soybean | cytosol | 22.79 | 21.68 |
| KRH68483 | Soybean | cytosol | 22.62 | 21.53 |
| KRH77049 | Soybean | cytosol | 18.2 | 21.26 |
| KRH05631 | Soybean | plastid | 19.34 | 20.96 |
| KRH28425 | Soybean | cytosol | 17.87 | 20.72 |
| KRH76059 | Soybean | cytosol, nucleus, peroxisome | 22.79 | 20.72 |
| KRH17127 | Soybean | cytosol | 21.48 | 20.09 |
| KRH65525 | Soybean | cytosol, peroxisome, plastid | 23.11 | 19.92 |
| KRH61346 | Soybean | cytosol | 14.26 | 12.46 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.5.2.6 | MapMan:19.2.2.8.1.4.2 | Gene3D:3.80.10.10 | EMBL:ACUP02010681 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | EnsemblPlantsGene:GLYMA_17G211000 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | UniProt:I1MWS3 |
| InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | EnsemblPlants:KRH05167 | ProteinID:KRH05167 | ProteinID:KRH05167.1 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF00646 | PFAM:PF13516 | PANTHER:PTHR44327 |
| PANTHER:PTHR44327:SF1 | SMART:SM00256 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00023D5B42 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr17:+:34811716..34815367
Molecular Weight (calculated)
65065.9 Da
IEP (calculated)
7.263
GRAVY (calculated)
0.141
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKVLGFSGV DDFCPMGSIY ANPKEASFFL PLGPQVDVYF PPRKRSRVNT PFVFDGEWFE QKPKTSVEAL PDECLFEIFR RLPSGEDRSA CACVSKRWLM
101: LLSSICKNEI CVNKNATVET IEKEGDDVEF GGEGYLSRSL EGKKATDVRL AAIAVGTSSR GGLGKLSIRG SNMVRGVTSH GLKAVARGCP SLKALSLWNV
201: ATVGDEGLIE IANGCHQLEK LDLCKCPAIT DKALVAIAKN CQNLTELSFE SCPNIGNEGL RAIGKLCSNL KSISIKDCTG VSDHGIAGLL SSTSLVLSKV
301: KLQALTVSDL SLAVIGHYGK SVTDLVLNCL PNVSERGFWV MGNGNGLQKL KSLTVASCKG VTDIGLEAVG KGCPNLKIAH LHKCAFLSDN GLMSFAKAAS
401: SLESLRLEEC HRITQLGFFG VLFNCGAKLK AISLVSCYGI KDLNLVLPTV SPCESLRSLS ISNCSGFGNA SLSVLGKLCP QLQHVELSGL EGVTDAGLLP
501: LLESSEAGLV KVNLSGCTNI TDKVVSSLAN LHGWTLENLN LDGCKNISDA SLMAIAENCA LLCDLDVSKC TITDAGIAVL AHAEQINLQI PFFVRLHFGL
601: RQELNRSEKN
101: LLSSICKNEI CVNKNATVET IEKEGDDVEF GGEGYLSRSL EGKKATDVRL AAIAVGTSSR GGLGKLSIRG SNMVRGVTSH GLKAVARGCP SLKALSLWNV
201: ATVGDEGLIE IANGCHQLEK LDLCKCPAIT DKALVAIAKN CQNLTELSFE SCPNIGNEGL RAIGKLCSNL KSISIKDCTG VSDHGIAGLL SSTSLVLSKV
301: KLQALTVSDL SLAVIGHYGK SVTDLVLNCL PNVSERGFWV MGNGNGLQKL KSLTVASCKG VTDIGLEAVG KGCPNLKIAH LHKCAFLSDN GLMSFAKAAS
401: SLESLRLEEC HRITQLGFFG VLFNCGAKLK AISLVSCYGI KDLNLVLPTV SPCESLRSLS ISNCSGFGNA SLSVLGKLCP QLQHVELSGL EGVTDAGLLP
501: LLESSEAGLV KVNLSGCTNI TDKVVSSLAN LHGWTLENLN LDGCKNISDA SLMAIAENCA LLCDLDVSKC TITDAGIAVL AHAEQINLQI PFFVRLHFGL
601: RQELNRSEKN
001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS
Arabidopsis Description
EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.