CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92429
KRG96377
KRG97777
KRH01878
KRH05167
KRH05620
KRH11147
KRH14993
KRH15421
KRH15886
KRH21099
KRH28611
KRH31107
KRH31921
KRH34377
KRH41674
KRH42623
KRH51281
KRH52046
KRH52439
KRH58731
KRH60371
KRH61359
KRH61771
KRH68108
KRH68185
KRH71533
KRH73146
KRH75237
KRH76867

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02570.1	KRH41674	AT2G01620.1	12795696
AT4G02570.1	KRH60371	AT2G01620.1	12795696
AT4G02570.1	KRH01878	AT2G02560.1	15208391
AT4G02570.1	KRH51281	AT2G02560.1	15208391
AT4G02570.1	KRH75237	AT2G02560.1	15208391
AT4G02570.1	KRH01878	AT2G02560.1	15208392
AT4G02570.1	KRH51281	AT2G02560.1	15208392
AT4G02570.1	KRH75237	AT2G02560.1	15208392
AT4G02570.1	KRH01878	AT2G02560.1	18550827
AT4G02570.1	KRH51281	AT2G02560.1	18550827
AT4G02570.1	KRH75237	AT2G02560.1	18550827
AT4G02570.1	KRH05167	AT2G25490.1	14675533
AT4G02570.1	KRH15886	AT2G25490.1	14675533
AT4G02570.1	KRH52439	AT2G25490.1	14675533
AT4G02570.1	KRH61771	AT2G25490.1	14675533
AT4G02570.1	KRG97777	AT2G39940.1	12172031
AT4G02570.1	KRH14993	AT2G39940.1	12172031
AT4G02570.1	KRH31107	AT2G39940.1	12172031
AT4G02570.1	KRH73146	AT2G39940.1	12172031
AT4G02570.1	KRG97777	AT2G39940.1	12445118
AT4G02570.1	KRH14993	AT2G39940.1	12445118
AT4G02570.1	KRH31107	AT2G39940.1	12445118
AT4G02570.1	KRH73146	AT2G39940.1	12445118
AT4G02570.1	KRG97777	AT2G39940.1	12724535
AT4G02570.1	KRH14993	AT2G39940.1	12724535
AT4G02570.1	KRH31107	AT2G39940.1	12724535
AT4G02570.1	KRH73146	AT2G39940.1	12724535
AT4G02570.1	KRG92429	AT3G23050.1	12839993
AT4G02570.1	KRH34377	AT3G23050.1	12839993
AT4G02570.1	KRG92429	AT3G23050.1	15208392
AT4G02570.1	KRH34377	AT3G23050.1	15208392
AT4G02570.1	KRG92429	AT3G23050.1	18550827
AT4G02570.1	KRH34377	AT3G23050.1	18550827
AT4G02570.1	KRH42623	AT3G26000.1	12795696
AT4G02570.1	KRH58731	AT3G26000.1	12795696
AT4G02570.1	KRG96377	AT3G62980.1	18550827
AT4G02570.1	KRH31921	AT3G62980.1	18550827
AT4G02570.1	KRH68108	AT3G62980.1	18550827
AT4G02570.1	KRH71533	AT3G62980.1	18550827
AT4G02570.1	KRH68185	AT4G02440.1	16412087
AT4G02570.1	KRH11147	AT4G05460.1	12795696
AT4G02570.1	KRH21099	AT4G05460.1	12795696
AT4G02570.1	KRH05620	AT4G24210.1	15161962
AT4G02570.1	KRH15421	AT4G24210.1	15161962
AT4G02570.1	KRH52046	AT4G24210.1	15161962
AT4G02570.1	KRH61359	AT4G24210.1	15161962
AT4G02570.1	KRH28611	AT4G36800.1	12682009
AT4G02570.1	KRH76867	AT4G36800.1	12682009
AT4G02570.1	KRH05167	AT5G25350.1	14675533
AT4G02570.1	KRH15886	AT5G25350.1	14675533
AT4G02570.1	KRH52439	AT5G25350.1	14675533
AT4G02570.1	KRH61771	AT5G25350.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68142	Soybean	cytosol	96.88	96.49
AT4G02570.1	Thale cress	cytosol	81.03	81.03
CDY22060	Canola	cytosol	80.76	80.76
Bra000874.1-P	Field mustard	cytosol	80.62	80.62
CDX90932	Canola	cytosol	80.62	80.62
CDY18013	Canola	cytosol	80.62	80.62
CDY21896	Canola	cytosol	80.49	80.49
KRH50876	Soybean	endoplasmic reticulum	80.22	79.57
KRH12127	Soybean	cytosol	80.22	79.57
KRH02236	Soybean	cytosol, nucleus	80.08	79.44
KRH37131	Soybean	cytosol, nucleus	79.95	79.3
KRH15695	Soybean	cytosol	35.91	72.6
Solyc01g067170.1.1	Tomato	mitochondrion, plastid	11.38	62.69
GSMUA_Achr9P17620_001	Banana	cytosol	60.57	60.65
Bra036257.1-P	Field mustard	cytosol, nucleus, peroxisome	80.49	60.24
AT1G59790.1	Thale cress	cytosol	28.86	56.95
Solyc01g067200.1.1	Tomato	cytosol	14.36	55.21
KRH21073	Soybean	cytosol	15.58	40.21
KRH45896	Soybean	cytosol	34.96	35.25
PGSC0003DMT400063662	Potato	cytosol	13.82	35.17
KRG99095	Soybean	cytosol	34.82	35.11
KRG93520	Soybean	cytosol	34.42	34.65
KRH18483	Soybean	cytosol	34.28	34.52
Os05t0193900-00	Rice	cytosol	17.75	32.51
KRH70713	Soybean	cytosol	31.98	32.46
EES04173	Sorghum	cytosol	11.79	30.42
KRH42547	Soybean	cytosol	31.03	29.78
KRH58640	Soybean	cytosol	31.03	29.55
Zm00001d042193_P001	Maize	cytosol	11.65	29.45
KRH11182	Soybean	cytosol, plastid	31.03	29.06
TraesCS3B01G497300.1	Wheat	cytosol	11.52	28.33
HORVU3Hr1G098530.4	Barley	cytosol	11.38	27.91
TraesCS3A01G457400.1	Wheat	cytosol	11.11	27.33
TraesCS3D01G450200.1	Wheat	cytosol	11.11	27.33
Os01t0935300-02	Rice	cytosol	10.98	27.0
KRH21072	Soybean	plastid	13.82	21.12

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:100819650	MapMan:19.2.2.8.1.2	EMBL:ACUP02012154
InterPro:Cullin_CS	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf
EnsemblPlantsGene:GLYMA_19G208600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461
GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	UniProt:I1NB34	InterPro:IPR016158	InterPro:IPR036388
EnsemblPlants:KRG96405	ProteinID:KRG96405	ProteinID:KRG96405.1	ProteinID:KRG96406.1	PFAM:PF00888	PFAM:PF10557
ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884
SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI000295DCA1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf

Description

hypothetical protein

Coordinates

chr19:-:46353560..46359461

Molecular Weight (calculated)

86176.7 Da

IEP (calculated)

7.068

GRAVY (calculated)

-0.455

Length

738 amino acids

Sequence
(BLAST)

001: MERKIIDFDQ GWDYMQKGIT KLKRILEGAP ETPFSSEEYM MLYTTIYNMC TQKPPNDFSQ QLYDKYKDAF DEYINTTVLP SLREKHDEFM LRELVQRWLN
101: HKVMVRWLSR FFHYLDRYFI SRRSLAGLGA VGLTCFRDSV YMEVRVNARK AVIALIDKER EGEQIDRSLL KNVLDIFVEI GMGEMDQYEQ DFEVHMLEDT
201: ADYYKSKAAN WIEIDSCPDY MLKAEDCLRR ERDRVSHYLH SSTEQKLVEK VQQEVLVIHA NQLLEKENSG CHALLRDDKV EDLSRMYRLY HKIPKGLDPV
301: ANVFKQHITA EGAALVQQAE EASSNQTTSG SGFQEQVLVR KFLELHDKYM AYVNDCFMNH TLFHKALKEA FEIFCNKTVG GSSSAELLST FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HEKCILTKLK QQCGGQFTSK MEGMVVDLTL ARDNQLKFEE YLRDNSHVNP
501: GIDLTVTVLT TGFWPSYKSF DLNLPSEMIR CLEVFKGFYE TRTKHRKLTW IYSLGTCHVT GKFDTKNIEL IVPTYPAAAL LLFNNADRLS YSEILTQLNL
601: GHEDVVRLLH SLSCAKYKIL IKEPNNKVIS QNDIFEFNHK FTDKMRRIKI PLPPADERKK VIEDVDKDRR YAIDAAIVRI MKSRKILGHQ QLVLECVEQL
701: GRMFKPDIKA IKKRIEDLIT RDYLERDKDN PNTFRYLA

Best Arabidopsis Sequence Match ( AT1G02980.2 )
(BLAST)

001: MAKKDSVLEA GWSVMEAGVA KLQKILEEVP DEPPFDPVQR MQLYTTVHNL CTQKPPNDYS QQIYDRYGGV YVDYNKQTVL PAIREKHGEY MLRELVKRWA
101: NQKILVRWLS HFFEYLDRFY TRRGSHPTLS AVGFISFRDL VYQELQSKAK DAVLALIHKE REGEQIDRAL LKNVIDVYCG NGMGELVKYE EDFESFLLED
201: SASYYSRNAS RWNQENSCPD YMIKAEESLR LEKERVTNYL HSTTEPKLVA KVQNELLVVV AKQLIENEHS GCRALLRDDK MDDLARMYRL YHPIPQGLDP
301: VADLFKQHIT VEGSALIKQA TEAATDKAAS TSGLKVQDQV LIRQLIDLHD KFMVYVDECF QKHSLFHKAL KEAFEVFCNK TVAGVSSAEI LATYCDNILK
401: TGGGIEKLEN EDLELTLEKV VKLLVYISDK DLFAEFFRKK QARRLLFDRN GNDYHERSLL TKFKELLGAQ FTSKMEGMLT DMTLAKEHQT NFVEFLSVNK
501: TKKLGMDFTV TVLTTGFWPS YKTTDLNLPI EMVNCVEAFK AYYGTKTNSR RLSWIYSLGT CQLAGKFDKK TIEIVVTTYQ AAVLLLFNNT ERLSYTEILE
601: QLNLGHEDLA RLLHSLSCLK YKILIKEPMS RNISNTDTFE FNSKFTDKMR RIRVPLPPMD ERKKIVEDVD KDRRYAIDAA LVRIMKSRKV LGHQQLVSEC
701: VEHLSKMFKP DIKMIKKRIE DLISRDYLER DTDNPNTFKY LA

Arabidopsis Description

CUL2Cullin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.