CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50384	Canola	cytosol	55.35	54.52
AT4G02440.1	Thale cress	cytosol	55.66	54.17
CDY22051	Canola	cytosol	54.74	53.92
Solyc09g075080.2.1	Tomato	cytosol	53.21	53.54
PGSC0003DMT400029665	Potato	cytosol, endoplasmic reticulum, nucleus	53.82	53.01
GSMUA_Achr11P...	Banana	cytosol	54.43	51.9
VIT_07s0005g00340.t01	Wine grape	cytosol	58.1	49.74
Bra036266.1-P	Field mustard	cytosol	55.96	44.74
GSMUA_Achr8P10140_001	Banana	plastid	53.52	42.37
Os05t0365000-00	Rice	cytosol	44.65	41.36
HORVU1Hr1G058630.1	Barley	cytosol	45.26	41.11
TraesCS1B01G244300.1	Wheat	cytosol	45.26	39.89
TraesCS1D01G232200.1	Wheat	cytosol	44.65	39.89
Zm00001d009918_P001	Maize	cytosol	45.26	39.57
TraesCS1A01G229800.1	Wheat	cytosol	44.65	39.46
EES18088	Sorghum	cytosol	44.04	37.4

Protein Annotations

EMBL:ACUP02002103	EnsemblPlants:KRH68185	EnsemblPlantsGene:GLYMA_03G214300	EntrezGene:100789324	Gene3D:1.20.1280.50	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	PANTHER:PTHR31348	PANTHER:PTHR31348:SF4	ProteinID:KRH68185
ProteinID:KRH68185.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0002339BE8	UniProt:I1JQL8	MapMan:19.2.2.8.1.4.6
MapMan:26.1.1.3.4	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:41913688..41915026

Molecular Weight (calculated)

37177.0 Da

IEP (calculated)

7.079

GRAVY (calculated)

-0.452

Length

327 amino acids

Sequence
(BLAST)

001: MDSEIEKKKN LFSELTDDIV LNIFYKLEDD PRHWARLACV CTKFSSLVRD FCWKTKCSLT IPQDLLSAAA SDPPLSLHKL SFCCPGLRHA GLLFDTSDFG
101: LERDLGPGNF NVITDDSPSN TTPPPPPPPP QQQQQQPPQS DDCSSSCWSL YDDLYYDTLY VPTESESPRL TESVSVRAGV DVASISACSK KRKLSRAWSS
201: HLASGSWTLS REQGSKLLAR KFRYDCLYVC EWPGCVHKEE KRKYCLFRGV FKNFRRTMVW RTIQDGKKRK MDLPCAFCAC EFTWDLHSSF CLRPGFGFHD
301: DGEPMVRAYV CENGHVSGAW TDLPIYT

Best Arabidopsis Sequence Match ( AT4G02440.1 )
(BLAST)

001: MAESVFSCIP EDVVFNIFFK LQDDPRNWAR LACVCTKFSS IVRNVCCKTQ CYSAIPTVIS DLLPLPPSAA ASASSSTAAD SSLTPPGGWA SLYKLAVCCP
101: GLFHAGILLE NSDFGLEREL GPDQNLDPKP TTTDLALNDE EVSKPVGSGL ETTSFWSLYD DLYTDTIPAP PPEDSIDDQE EEIETSEIRP GRDLPVRKRR
201: KICRSLGSHL ASGGWNLSRE QGNKLLASRF RGDCLYICNW PGCIHVEEKR NYMLFRGVFK DFKRSRVWRT INDGNRSKTS GLKCAFCLCD ETWDLHSSFC
301: LRRVFGFHDD GEPVVRAYVC ENGHVSGAWT ALPLYT

Arabidopsis Description

EID1Phytochrome A-associated F-box protein [Source:UniProtKB/Swiss-Prot;Acc:Q8LEA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.