Factsheet for PGSC0003DMT400029665

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, endoplasmic reticulum

Predictor Summary:

nucleus 3
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075080.2.1	Tomato	cytosol	90.96	92.92
AT4G02440.1	Thale cress	cytosol	61.14	60.42
CDY22051	Canola	cytosol	59.04	59.04
CDY50384	Canola	cytosol	59.04	59.04
VIT_07s0005g00340.t01	Wine grape	cytosol	64.16	55.76
GSMUA_Achr11P...	Banana	cytosol	55.72	53.94
KRH68185	Soybean	nucleus	53.01	53.82
Bra036266.1-P	Field mustard	cytosol	59.94	48.66
GSMUA_Achr8P10140_001	Banana	plastid	53.31	42.86
Os05t0365000-00	Rice	cytosol	45.48	42.78
HORVU1Hr1G058630.1	Barley	cytosol	43.07	39.72
TraesCS1B01G244300.1	Wheat	cytosol	43.98	39.35
TraesCS1D01G232200.1	Wheat	cytosol	43.37	39.34
Zm00001d009918_P001	Maize	cytosol	44.28	39.3
TraesCS1A01G229800.1	Wheat	cytosol	43.67	39.19
EES18088	Sorghum	cytosol	43.98	37.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400029665	EnsemblPlantsGene:PGSC0003DMG400011401	EntrezGene:102593525	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	PANTHER:PTHR31348	PANTHER:PTHR31348:SF4	PGSC:PGSC0003DMG400011401	RefSeq:XP_006359377.1	SEG:seg
SUPFAM:SSF81383	UniParc:UPI000296B26D	UniProt:M1AT80	MapMan:19.2.2.8.1.4.6	MapMan:26.1.1.3.4	:

Description

Phytochrome A-associated F-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011401]

Coordinates

chr9:-:52622427..52624950

Molecular Weight (calculated)

37519.2 Da

IEP (calculated)

6.599

GRAVY (calculated)

-0.352

Length

332 amino acids

Sequence
(BLAST)

001: MSNSCIVDGF FSKLSEDLVL NIFFKLEDDP RNWTRLSCVS TKFAFLIHTI CYKSKCSLTI PSVVSDLVSS STSSCPPGGW SSLYKLAVCC PGLHQAGVLL
101: ENSDFGLERE LGPDENYSGR VLPKSDSLQT QLMPSSSSNN NNRSDSAEVA DSGWSLFDDL MFDTVYDASE STSNQIEVVE EEPSNLVVTP TRLAKRRKIY
201: RSPCSHLASG VWNLSREQGN KLLASRFKGD CLYICDWPGC IHMEEKRNYM LFRGIFKNFK QSRVWRTIND GNRKKIDLNC AFCSAKQTWD LHSAFCLRRY
301: FGYHDDGEPV VRAYVCENGH VSGAWTDWPL YT

Best Arabidopsis Sequence Match ( AT4G02440.1 )
(BLAST)

001: MAESVFSCIP EDVVFNIFFK LQDDPRNWAR LACVCTKFSS IVRNVCCKTQ CYSAIPTVIS DLLPLPPSAA ASASSSTAAD SSLTPPGGWA SLYKLAVCCP
101: GLFHAGILLE NSDFGLEREL GPDQNLDPKP TTTDLALNDE EVSKPVGSGL ETTSFWSLYD DLYTDTIPAP PPEDSIDDQE EEIETSEIRP GRDLPVRKRR
201: KICRSLGSHL ASGGWNLSRE QGNKLLASRF RGDCLYICNW PGCIHVEEKR NYMLFRGVFK DFKRSRVWRT INDGNRSKTS GLKCAFCLCD ETWDLHSSFC
301: LRRVFGFHDD GEPVVRAYVC ENGHVSGAWT ALPLYT

Arabidopsis Description

EID1Phytochrome A-associated F-box protein [Source:UniProtKB/Swiss-Prot;Acc:Q8LEA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.