Factsheet for VIT_07s0005g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02440.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696
AT4G02440.1	VIT_18s0001g14860.t01	AT5G42190.1	16412087
AT4G02440.1	VIT_18s0001g14860.t01	AT5G42190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075080.2.1	Tomato	cytosol	56.02	65.85
PGSC0003DMT400029665	Potato	cytosol, endoplasmic reticulum, nucleus	55.76	64.16
AT4G02440.1	Thale cress	cytosol	55.24	62.8
CDY50384	Canola	cytosol	53.14	61.14
CDY22051	Canola	cytosol	52.36	60.24
KRH68185	Soybean	nucleus	49.74	58.1
GSMUA_Achr11P...	Banana	cytosol	50.52	56.27
Bra036266.1-P	Field mustard	cytosol	53.4	49.88
Os05t0365000-00	Rice	cytosol	42.93	46.46
GSMUA_Achr8P10140_001	Banana	plastid	50.0	46.25
HORVU1Hr1G058630.1	Barley	cytosol	43.19	45.83
TraesCS1D01G232200.1	Wheat	cytosol	43.19	45.08
TraesCS1B01G244300.1	Wheat	cytosol	43.72	45.01
Zm00001d009918_P001	Maize	cytosol	42.93	43.85
TraesCS1A01G229800.1	Wheat	cytosol	42.41	43.78
EES18088	Sorghum	cytosol	43.46	43.12

Protein Annotations

EntrezGene:100250321	wikigene:100250321	MapMan:19.2.2.8.1.4.6	MapMan:26.1.1.3.4	EMBL:AM463653	ProteinID:CAN81258
ProteinID:CAN81258.1	ProteinID:CCB59958	ProteinID:CCB59958.1	InterPro:F-box-like_dom_sf	UniProt:F6HZ43	EMBL:FN596502
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	EntrezGene:LOC100250321
wikigene:LOC100250321	PANTHER:PTHR31348	PANTHER:PTHR31348:SF4	SUPFAM:SSF81383	UniParc:UPI00015CAC1A	ArrayExpress:VIT_07s0005g00340
EnsemblPlantsGene:VIT_07s0005g00340	EnsemblPlants:VIT_07s0005g00340.t01	unigene:Vvi.15704	RefSeq:XP_002266159	RefSeq:XP_002266159.1	RefSeq:XP_002266159.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:3103744..3104991

Molecular Weight (calculated)

42456.9 Da

IEP (calculated)

6.495

GRAVY (calculated)

-0.355

Length

382 amino acids

Sequence
(BLAST)

001: MHKTTEYHKF CKPRSQTTCV EVQRVGESPN PGGSSVFAEG KISDTHFANQ SAMTMGNETV FSKLSDDVVL SILFKLEDDP RYWARLACVC TKFSSLIRNV
101: CWKTKCSQTI PSIVADLFSG PGDSSPPGGW AALHKLSVCC PGLLHSGVLL ENSDFGLERE LGPDEDYRKA GSFQITVGDA TTPAVASSSH HDGNSEVSDS
201: CSWSLFDDLY FDTLYNVSET MDETQIGVEV ENGAVKVGGD LPVSKTVKSC RPLRSHLASG VWNLSREQGN KLLASRFRGD CLYICDWPGC VHVEEKRNYM
301: LFRGVFKNFK RSRVWRTIND GNRSKVDLNC AFCPCKETWD LHSAFCLRRG FGYHDDGEPV VRAYVCENGH VSGAWTEYPL YT

Best Arabidopsis Sequence Match ( AT4G02440.1 )
(BLAST)

001: MAESVFSCIP EDVVFNIFFK LQDDPRNWAR LACVCTKFSS IVRNVCCKTQ CYSAIPTVIS DLLPLPPSAA ASASSSTAAD SSLTPPGGWA SLYKLAVCCP
101: GLFHAGILLE NSDFGLEREL GPDQNLDPKP TTTDLALNDE EVSKPVGSGL ETTSFWSLYD DLYTDTIPAP PPEDSIDDQE EEIETSEIRP GRDLPVRKRR
201: KICRSLGSHL ASGGWNLSRE QGNKLLASRF RGDCLYICNW PGCIHVEEKR NYMLFRGVFK DFKRSRVWRT INDGNRSKTS GLKCAFCLCD ETWDLHSSFC
301: LRRVFGFHDD GEPVVRAYVC ENGHVSGAWT ALPLYT

Arabidopsis Description

EID1Phytochrome A-associated F-box protein [Source:UniProtKB/Swiss-Prot;Acc:Q8LEA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.