Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22051 | Canola | cytosol | 90.06 | 90.06 |
| AT4G02440.1 | Thale cress | cytosol | 79.82 | 78.87 |
| Solyc09g075080.2.1 | Tomato | cytosol | 59.64 | 60.92 |
| PGSC0003DMT400029665 | Potato | cytosol, endoplasmic reticulum, nucleus | 59.04 | 59.04 |
| KRH68185 | Soybean | nucleus | 54.52 | 55.35 |
| VIT_07s0005g00340.t01 | Wine grape | cytosol | 61.14 | 53.14 |
| GSMUA_Achr11P... | Banana | cytosol | 53.61 | 51.9 |
| GSMUA_Achr8P10140_001 | Banana | plastid | 53.31 | 42.86 |
| Os05t0365000-00 | Rice | cytosol | 45.48 | 42.78 |
| HORVU1Hr1G058630.1 | Barley | cytosol | 44.58 | 41.11 |
| TraesCS1D01G232200.1 | Wheat | cytosol | 44.58 | 40.44 |
| TraesCS1B01G244300.1 | Wheat | cytosol | 45.18 | 40.43 |
| TraesCS1A01G229800.1 | Wheat | cytosol | 44.88 | 40.27 |
| Zm00001d009918_P001 | Maize | cytosol | 43.98 | 39.04 |
| EES18088 | Sorghum | cytosol | 44.28 | 38.18 |
Protein Annotations
| EnsemblPlants:CDY50384 | EnsemblPlantsGene:GSBRNA2T00096605001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| PANTHER:PTHR31348 | PANTHER:PTHR31348:SF4 | ProteinID:CDY50384 | ProteinID:CDY50384.1 | SEG:seg | SUPFAM:SSF81383 |
| UniParc:UPI0004EDAEAF | UniProt:A0A078ILX0 | MapMan:19.2.2.8.1.4.6 | MapMan:26.1.1.3.4 | : | : |
Description
BnaCnng19160DBnaCnng19160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILX0]
Coordinates
chrLK032905:-:49623..51018
Molecular Weight (calculated)
36855.5 Da
IEP (calculated)
6.881
GRAVY (calculated)
-0.346
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEAGCFSFV PEDVVFNIFF KLQDDPRNWA RLACVCTKFS SIVRNVCCKS LCYSSIPAVV SELLPSPSAA SSSSSLPPPG GWASLYKLAV CCPGLHHAGI
101: LLENSDFGLE RELGPDQSLT DPGQVSKPPT SPFQSVSKQV ESGLETQSFW SLYDDLYTDT LSAPPEDSLN EPQQPTETTE IRPGRGDLPA KKRRKISRSL
201: GSHLAHGGWS LSREQGTKLL ASRFRGDCLY ICNWPGCTHV EEKRTYMLFR GVFKDFKRSR VWRTINEDGG GRSKVTGLKC AFCECDETWD MHSSFCLRRV
301: FGFHDDGEPV VRAYVCENGH VSGAWTNLPL YT
101: LLENSDFGLE RELGPDQSLT DPGQVSKPPT SPFQSVSKQV ESGLETQSFW SLYDDLYTDT LSAPPEDSLN EPQQPTETTE IRPGRGDLPA KKRRKISRSL
201: GSHLAHGGWS LSREQGTKLL ASRFRGDCLY ICNWPGCTHV EEKRTYMLFR GVFKDFKRSR VWRTINEDGG GRSKVTGLKC AFCECDETWD MHSSFCLRRV
301: FGFHDDGEPV VRAYVCENGH VSGAWTNLPL YT
001: MAESVFSCIP EDVVFNIFFK LQDDPRNWAR LACVCTKFSS IVRNVCCKTQ CYSAIPTVIS DLLPLPPSAA ASASSSTAAD SSLTPPGGWA SLYKLAVCCP
101: GLFHAGILLE NSDFGLEREL GPDQNLDPKP TTTDLALNDE EVSKPVGSGL ETTSFWSLYD DLYTDTIPAP PPEDSIDDQE EEIETSEIRP GRDLPVRKRR
201: KICRSLGSHL ASGGWNLSRE QGNKLLASRF RGDCLYICNW PGCIHVEEKR NYMLFRGVFK DFKRSRVWRT INDGNRSKTS GLKCAFCLCD ETWDLHSSFC
301: LRRVFGFHDD GEPVVRAYVC ENGHVSGAWT ALPLYT
101: GLFHAGILLE NSDFGLEREL GPDQNLDPKP TTTDLALNDE EVSKPVGSGL ETTSFWSLYD DLYTDTIPAP PPEDSIDDQE EEIETSEIRP GRDLPVRKRR
201: KICRSLGSHL ASGGWNLSRE QGNKLLASRF RGDCLYICNW PGCIHVEEKR NYMLFRGVFK DFKRSRVWRT INDGNRSKTS GLKCAFCLCD ETWDLHSSFC
301: LRRVFGFHDD GEPVVRAYVC ENGHVSGAWT ALPLYT
Arabidopsis Description
EID1Phytochrome A-associated F-box protein [Source:UniProtKB/Swiss-Prot;Acc:Q8LEA8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.