CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68078
CDX71564
CDX72730
CDX73462
CDX76980
CDX78253
CDX86323
CDX86535
CDX87476
CDX88418
CDX90932
CDY00072
CDY01803
CDY03475
CDY05613
CDY05699
CDY07427
CDY10172
CDY12640
CDY14629
CDY15562
CDY18013
CDY19964
CDY21896
CDY22051
CDY22060
CDY22405
CDY26850
CDY28891
CDY33892
CDY34266
CDY35358
CDY41983
CDY41985
CDY42631
CDY42633
CDY45130
CDY47716
CDY48548
CDY48737
CDY50384
CDY51342
CDY53173
CDY54510
CDY55831
CDY64339
CDY70354

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60010.1	CDX86535	AT1G06110.1	12169662
AT3G60010.1	CDY10172	AT1G06110.1	12169662
AT3G60010.1	CDY15562	AT1G06110.1	12169662
AT3G60010.1	CDY47716	AT1G06110.1	12169662
AT3G60010.1	CDX71564	AT1G55000.1	12169662
AT3G60010.1	CDY45130	AT1G55000.1	12169662
AT3G60010.1	CDY01803	AT1G67340.1	12169662
AT3G60010.1	CDY07427	AT1G67340.1	12169662
AT3G60010.1	CDY12640	AT1G67340.1	12169662
AT3G60010.1	CDY28891	AT1G67340.1	12169662
AT3G60010.1	CDY51342	AT1G67340.1	12169662
AT3G60010.1	CDY70354	AT1G67340.1	12169662
AT3G60010.1	CDX68078	AT1G76920.1	12169662
AT3G60010.1	CDY48548	AT1G76920.1	12169662
AT3G60010.1	CDX87476	AT1G78100.1	12169662
AT3G60010.1	CDX88418	AT1G78100.1	12169662
AT3G60010.1	CDY14629	AT1G78100.1	12169662
AT3G60010.1	CDY26850	AT1G78100.1	12169662
AT3G60010.1	CDX76980	AT2G25490.1	12169662
AT3G60010.1	CDY35358	AT2G25490.1	12169662
AT3G60010.1	CDX73462	AT3G54650.1	19277118
AT3G60010.1	CDX78253	AT3G54650.1	19277118
AT3G60010.1	CDY55831	AT3G54650.1	19277118
AT3G60010.1	CDY64339	AT3G54650.1	19277118
AT3G60010.1	CDY22051	AT4G02440.1	16412087
AT3G60010.1	CDY50384	AT4G02440.1	16412087
AT3G60010.1	CDX90932	AT4G02570.1	16412087
AT3G60010.1	CDY18013	AT4G02570.1	16412087
AT3G60010.1	CDY21896	AT4G02570.1	16412087
AT3G60010.1	CDY22060	AT4G02570.1	16412087
AT3G60010.1	CDY03475	AT4G24210.1	15161962
AT3G60010.1	CDY34266	AT4G24210.1	15161962
AT3G60010.1	CDX72730	AT4G38940.1	12169662
AT3G60010.1	CDY22405	AT4G38940.1	12169662
AT3G60010.1	CDY41983	AT4G39550.1	14749489
AT3G60010.1	CDY41985	AT4G39550.1	14749489
AT3G60010.1	CDY42631	AT4G39550.1	14749489
AT3G60010.1	CDY42633	AT4G39550.1	14749489
AT3G60010.1	CDY53173	AT4G39550.1	14749489
AT3G60010.1	CDX86323	AT5G48170.1	15161962
AT3G60010.1	CDY00072	AT5G48170.1	15161962
AT3G60010.1	CDY05699	AT5G48170.1	15161962
AT3G60010.1	CDY19964	AT5G48170.1	15161962
AT3G60010.1	CDY48737	AT5G48170.1	15161962
AT3G60010.1	CDY54510	AT5G48170.1	15161962
AT3G60010.1	CDY05613	AT5G49610.1	14749489
AT3G60010.1	CDY33892	AT5G49610.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16470	Canola	cytosol	93.08	93.08
CDX68112	Canola	cytosol	64.15	67.55
CDX85931	Canola	cytosol	64.15	67.55
CDY40611	Canola	cytosol	63.52	67.33
CDX93699	Canola	cytosol	67.3	66.88
CDY40610	Canola	cytosol	64.15	65.38
CDY39073	Canola	cytosol	65.41	65.0
CDY13521	Canola	cytosol	65.41	65.0
CDX93698	Canola	cytosol	63.52	64.74
CDX73212	Canola	cytosol	65.41	64.6
CDX87650	Canola	cytosol	65.41	64.6
AT3G60010.1	Thale cress	cytosol	60.38	62.34
CDY44209	Canola	cytosol	58.49	57.76
CDY29370	Canola	cytosol	57.86	57.14
CDY69121	Canola	cytosol	45.28	54.96
CDX89042	Canola	cytosol	54.09	54.09
CDY67544	Canola	cytosol	54.72	54.04
CDY01389	Canola	cytosol	54.09	53.42
CDY63159	Canola	cytosol	54.09	53.42
CDX80590	Canola	cytosol	54.09	53.42
CDY43408	Canola	cytosol	49.69	51.97
CDY03015	Canola	cytosol	49.06	51.66
CDY68971	Canola	cytosol	49.06	51.32
CDY45767	Canola	cytosol	49.69	51.3
CDY04140	Canola	cytosol	49.06	49.06
CDY14922	Canola	cytosol	50.31	47.62
CDY17409	Canola	cytosol	46.54	46.54
CDX96963	Canola	cytosol	49.06	41.27

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:A0A078CK48	EnsemblPlants:CDX77280	ProteinID:CDX77280	ProteinID:CDX77280.1
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00128003001	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniPathway:UPA00143	UniParc:UPI0004EE1234	SEG:seg

Description

BnaC08g03250D

Coordinates

chrLK031810:-:774564..775043

Molecular Weight (calculated)

17974.4 Da

IEP (calculated)

3.933

GRAVY (calculated)

-0.089

Length

159 amino acids

Sequence
(BLAST)

001: MSTFKIITLK SCDDKIFKVD EAVAVQSQMI AHMVEDDCVD GEIPISNVTG VILAKVIEYC KKHLVNPDVD GDSSSSTEDE LKNWDAEFMK NMDQEMLFAL
101: IMAANYLNIK DLLDLICQTI ADMIKGFSVD EVRTFFNIKN DFTPEEEAEI GAENEWAFE

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.