Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15562 | Canola | cytosol | 94.44 | 96.45 |
| AT1G06110.1 | Thale cress | cytosol | 81.25 | 80.5 |
| CDY10172 | Canola | cytosol | 71.99 | 71.66 |
| CDY47716 | Canola | cytosol | 59.26 | 67.37 |
| VIT_05s0102g01140.t01 | Wine grape | cytosol | 62.27 | 60.59 |
| PGSC0003DMT400042138 | Potato | cytosol | 60.65 | 59.14 |
| Solyc06g053340.2.1 | Tomato | cytosol | 59.72 | 58.24 |
| KRH29609 | Soybean | cytosol | 59.49 | 58.01 |
| KRH24605 | Soybean | cytosol | 58.33 | 56.88 |
| VIT_05s0102g01150.t01 | Wine grape | cytosol | 59.95 | 56.18 |
| GSMUA_Achr1P13390_001 | Banana | cytosol | 49.77 | 51.93 |
| TraesCS4B01G084200.1 | Wheat | cytosol | 50.69 | 48.67 |
| TraesCS4D01G082100.1 | Wheat | cytosol | 50.23 | 48.44 |
| Os11t0265200-00 | Rice | extracellular | 51.16 | 48.36 |
| TraesCS4A01G231800.1 | Wheat | cytosol | 49.77 | 47.99 |
| HORVU4Hr1G014490.3 | Barley | cytosol, plastid | 50.23 | 47.69 |
| EES09667 | Sorghum | cytosol | 48.38 | 46.55 |
| Zm00001d049083_P002 | Maize | cytosol | 46.53 | 44.67 |
| Os11t0264700-01 | Rice | cytosol, peroxisome, plastid | 39.58 | 38.69 |
Protein Annotations
| Gene3D:2.60.40.1470 | MapMan:35.1 | InterPro:ApaG_domain | InterPro:ApaG_sf | EnsemblPlants:CDX86535 | ProteinID:CDX86535 |
| ProteinID:CDX86535.1 | InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00145151001 |
| InterPro:IPR007474 | InterPro:IPR036767 | InterPro:Knr4/Smi1-like_dom | PFAM:PF04379 | PFAM:PF09346 | PFscan:PS51087 |
| PANTHER:PTHR14289 | PANTHER:PTHR14289:SF26 | SUPFAM:SSF110069 | SUPFAM:SSF160631 | SUPFAM:SSF81383 | UniParc:UPI0004EAE855 |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g01680D
Coordinates
chrLK031846:+:474075..476236
Molecular Weight (calculated)
48343.5 Da
IEP (calculated)
4.803
GRAVY (calculated)
-0.200
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLEEAGDLV LHIILSKIGP ENTARVACVS KRLKVSASED SLWSIFCSLD LNISTPLDPH GDPSPSFKMA YQSWRESFIM YPWHLVKRVS HCWDNLKLWL
101: SLNFPEAEAT LRKGATEEDL EEFESALKVK LPLPTRLLYR FVDGQEPPPP SSSPSSGLDG SLGLIGGYSV YSHDVNVYLL PLKEVIRETN ETMSDLGVSN
201: GSNFIAVAAS ATASLKMFFL DCSDGQLYTR TSTRQMLPCV PEINGDQQQD GMLRWLEEHG RRLQSGVIKV REEDNIKSIS LFPEVPPLCS VAVTNGVQVR
301: ASSVFIPEVS NLRAQPPAYW YAYSIRMSLV PEGCFLNGRH HSSCQLYWRH WIIRADDEVI DKVNGEAVIG KYPLLQAEEE EFVYESCSNF PTTSGSIEGS
401: FTFIPGSLKD PKGSQFEVKV EEFPLKLPDY IF
101: SLNFPEAEAT LRKGATEEDL EEFESALKVK LPLPTRLLYR FVDGQEPPPP SSSPSSGLDG SLGLIGGYSV YSHDVNVYLL PLKEVIRETN ETMSDLGVSN
201: GSNFIAVAAS ATASLKMFFL DCSDGQLYTR TSTRQMLPCV PEINGDQQQD GMLRWLEEHG RRLQSGVIKV REEDNIKSIS LFPEVPPLCS VAVTNGVQVR
301: ASSVFIPEVS NLRAQPPAYW YAYSIRMSLV PEGCFLNGRH HSSCQLYWRH WIIRADDEVI DKVNGEAVIG KYPLLQAEEE EFVYESCSNF PTTSGSIEGS
401: FTFIPGSLKD PKGSQFEVKV EEFPLKLPDY IF
001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF
Arabidopsis Description
SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.