Factsheet for PGSC0003DMT400042138

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053340.2.1	Tomato	cytosol	94.58	94.58
VIT_05s0102g01140.t01	Wine grape	cytosol	63.88	63.74
KRH29609	Soybean	cytosol	62.3	62.3
Bra030639.1-P	Field mustard	cytosol	59.37	62.17
CDY15562	Canola	cytosol	59.37	62.17
KRH24605	Soybean	cytosol	60.72	60.72
CDX86535	Canola	cytosol	59.14	60.65
AT1G06110.1	Thale cress	cytosol	59.14	60.09
VIT_05s0102g01150.t01	Wine grape	cytosol	61.85	59.44
GSMUA_Achr1P13390_001	Banana	cytosol	51.92	55.56
CDY10172	Canola	cytosol	51.69	52.77
Os11t0265200-00	Rice	extracellular	52.82	51.2
TraesCS4B01G084200.1	Wheat	cytosol	51.02	50.22
TraesCS4D01G082100.1	Wheat	cytosol	50.56	50.0
TraesCS4A01G231800.1	Wheat	cytosol	50.34	49.78
Bra015474.1-P	Field mustard	cytosol	44.47	49.62
CDY47716	Canola	cytosol	41.99	48.95
HORVU4Hr1G014490.3	Barley	cytosol, plastid	50.11	48.79
EES09667	Sorghum	cytosol	49.44	48.78
Zm00001d049083_P002	Maize	cytosol	46.73	46.0
Os11t0264700-01	Rice	cytosol, peroxisome, plastid	40.41	40.5

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102603288	Gene3D:2.60.40.1470	MapMan:35.1	InterPro:ApaG_domain	InterPro:ApaG_sf
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0019005	InterPro:IPR001810	InterPro:IPR007474	InterPro:IPR036767
UniProt:M1BCK1	PFAM:PF00646	PFAM:PF04379	EnsemblPlantsGene:PGSC0003DMG400016341	PGSC:PGSC0003DMG400016341	EnsemblPlants:PGSC0003DMT400042138
PFscan:PS51087	PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	SUPFAM:SSF110069	SUPFAM:SSF160631	SUPFAM:SSF81383
UniParc:UPI000294C945	RefSeq:XP_006350713.1	SEG:seg	:	:	:

Description

F-box-containing protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400016341]

Coordinates

chr6:+:39083934..39089876

Molecular Weight (calculated)

49872.0 Da

IEP (calculated)

6.589

GRAVY (calculated)

-0.123

Length

443 amino acids

Sequence
(BLAST)

001: MDLERLGGLS MHIILSKLTP QDAASVACVS KRFRNWSSDD LLWSKFCADD LDLYSPIDPL GNPLPSFKAS YQTWREDFNR YPWPLVTRVK RCWDRLKEWL
101: AINFPEVLST LRKGASEEEI LELEKSLKVK LPLPTRVLYR FYDGQELSSE ESSGSVPGSL LGLMGGYSFY DHLVNVSLLP LHQMIIETKE TIRHIGLGNR
201: SKYVVVAASC GYNEKVFFLN CSTGQLNVGT RNLTTDGEMI PCVPSALISS VHNVKGTQPQ DAMLLWLEEH VRRLQHGVIK VRKEGKVRSI SLFPEVPPLC
301: SLAVTNGVKV RASSVFVPEF STIQDDYQKF FFAYSICMSL SPEGCIMNGM TFNSCQLYCR HWIIRCNDNV VDDVNGEAVI GKYPLLRPGE EEYVYQSCSS
401: QPHSPGSIEG SFTFVPGRLA DPKGSPFEAV VSRFTLVMPD YIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.