Factsheet for GSMUA_Achr1P13390_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0265200-00	Rice	extracellular	61.59	55.8
TraesCS4B01G084200.1	Wheat	cytosol	60.39	55.56
TraesCS4A01G231800.1	Wheat	cytosol	59.66	55.13
TraesCS4D01G082100.1	Wheat	cytosol	59.42	54.91
HORVU4Hr1G014490.3	Barley	cytosol, plastid	59.66	54.29
VIT_05s0102g01140.t01	Wine grape	cytosol	57.73	53.83
EES09667	Sorghum	cytosol	56.76	52.34
PGSC0003DMT400042138	Potato	cytosol	55.56	51.92
Solyc06g053340.2.1	Tomato	cytosol	54.83	51.24
Bra030639.1-P	Field mustard	cytosol	51.69	50.59
CDY15562	Canola	cytosol	51.69	50.59
CDX86535	Canola	cytosol	51.93	49.77
Zm00001d049083_P002	Maize	cytosol	53.86	49.56
AT1G06110.1	Thale cress	cytosol	51.21	48.62
KRH29609	Soybean	cytosol	51.93	48.53
KRH24605	Soybean	cytosol	51.93	48.53
VIT_05s0102g01150.t01	Wine grape	cytosol	53.62	48.16
CDY10172	Canola	cytosol	46.86	44.7
Os11t0264700-01	Rice	cytosol, peroxisome, plastid	47.34	44.34
Bra015474.1-P	Field mustard	cytosol	41.79	43.58
CDY47716	Canola	cytosol	39.61	43.16

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.60.40.1470	MapMan:35.1	InterPro:ApaG_domain	InterPro:ApaG_sf	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0019005	EnsemblPlantsGene:GSMUA_Achr1G13390_001	EnsemblPlants:GSMUA_Achr1P13390_001	EnsemblPlants:GSMUA_Achr1T13390_001	InterPro:IPR001810
InterPro:IPR007474	InterPro:IPR036767	UniProt:M0RZJ7	PFAM:PF00646	PFAM:PF04379	PFscan:PS51087
PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	SUPFAM:SSF110069	SUPFAM:SSF81383	UniParc:UPI000294B41D	SEG:seg

Description

Putative F-box protein SKIP16 [Source:GMGC_GENE;Acc:GSMUA_Achr1G13390_001]

Coordinates

chr1:-:10230891..10234626

Molecular Weight (calculated)

46062.6 Da

IEP (calculated)

5.309

GRAVY (calculated)

0.005

Length

414 amino acids

Sequence
(BLAST)

001: MAAVLEGLGV PVLETILSKV AFSDAAAAAC VSTTLRSVAS DDALWRHFCA RDLAVCDQPL DPDGNPCHSF KEAYRRWFES FGMYPFPLVR RAKECWSSIK
101: SWMAVNLPEV NDTLRKGASE AEIKSAEKIL GVQLPIPTKV LYRLCDGQQT LTPDLVENKL LAPLGVIGGY EFYDYIVNVH LLPLRLVKFF FLNCTNGQLY
201: VGTRNLREDG EMMPCVPQSL IRPAVDIGHD MPQDALLLWL EEHCRRLQSG MIKTRELKDC RSICIFPETP PYCSVAVTNG VQVRSSAIFV PEASEGNGGD
301: YYYSYSIRMS LLPEGCLLDG TYYSSCQLCS RHWIIRSRDI IVSDVGGEAV IGKFPLLIPG KEEFVYQSCT PLSGAPGSIE GSFTFVPGRI SKPEGRHFDA
401: KVAPFILEEP EYIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.