Factsheet for VIT_05s0102g01150.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06110.1	VIT_18s0001g14860.t01	AT5G42190.1	12169662
AT1G06110.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696
AT1G06110.1	VIT_18s0001g14860.t01	AT5G42190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0102g01140.t01	Wine grape	cytosol	88.29	91.67
PGSC0003DMT400042138	Potato	cytosol	59.44	61.85
Solyc06g053340.2.1	Tomato	cytosol	59.0	61.4
Bra030639.1-P	Field mustard	cytosol	56.18	61.23
KRH29609	Soybean	cytosol	58.79	61.17
CDY15562	Canola	cytosol	55.97	60.99
CDX86535	Canola	cytosol	56.18	59.95
AT1G06110.1	Thale cress	cytosol	56.62	59.86
KRH24605	Soybean	cytosol	57.48	59.82
GSMUA_Achr1P13390_001	Banana	cytosol	48.16	53.62
CDY10172	Canola	cytosol	49.02	52.07
TraesCS4B01G084200.1	Wheat	cytosol	48.81	50.0
Os11t0265200-00	Rice	extracellular	48.81	49.23
TraesCS4D01G082100.1	Wheat	cytosol	47.72	49.11
TraesCS4A01G231800.1	Wheat	cytosol	47.72	49.11
HORVU4Hr1G014490.3	Barley	cytosol, plastid	48.37	49.01
Bra015474.1-P	Field mustard	cytosol	41.0	47.61
CDY47716	Canola	cytosol	38.61	46.84
EES09667	Sorghum	cytosol	45.55	46.77
Zm00001d049083_P002	Maize	cytosol	42.95	44.0
Os11t0264700-01	Rice	cytosol, peroxisome, plastid	37.53	39.14

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.60.40.1470	MapMan:35.1	InterPro:ApaG_domain	InterPro:ApaG_sf	ProteinID:CCB59884
ProteinID:CCB59884.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6HYX0	EMBL:FN596500	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR007474	InterPro:IPR036767	PFAM:PF00646
PFAM:PF04379	PFscan:PS51087	PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	SUPFAM:SSF110069	SUPFAM:SSF160631
SUPFAM:SSF81383	UniParc:UPI000210A7B0	ArrayExpress:VIT_05s0102g01150	EnsemblPlantsGene:VIT_05s0102g01150	EnsemblPlants:VIT_05s0102g01150.t01	:

Description

No Description!

Coordinates

chr5:-:23265164..23285995

Molecular Weight (calculated)

51209.8 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.085

Length

461 amino acids

Sequence
(BLAST)

001: MEMRLEDLGD LAINAIISKL DAKDTVAVSC VSKKLRVSAS EESLWLNHCS QDLGLSAPID PLGKPAPSFK ETYQLWRESF GMYPWPLVKR VKRCWDRLKN
101: WLSANFPDAD ATLRKGATEV EIEALENILK VKLPLPTRLL YRFCDGQELT EEDVGGTALG GSLGIMGGYC CNDHLVNVCL LPLRQVILET KEITDQLGFS
201: TTSKYVIVAA SSTYIGKFFF LNCTTGQLYV GTRSLVSAGE MIPCVPNALI SPMHDMNTGQ QQDAMLLWLE EHVRRLQNGI IKLRKEGMIR SINLFPEEPP
301: LCSTAVTNGI QVRASAVFIP EGCNLRDKSH KYVFAYSIRM RLLPEGCIVN GISFGSCQLN WRHWIIRAND HVVSEVNAEA VIGKYPLLYP GGEEFVYESC
401: THLSSSRGSI EGAFTFVPGS FNSYTKSSVF GRDSEREACG FLPRQMDAIL GPKNGDRLVA D

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.