CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX77280
CDX80590
CDX85931
CDX87650
CDX93698
CDX93699
CDY01389
CDY13521
CDY16470
CDY29370
CDY39073
CDY40610
CDY40611
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06110.1	CDY01389	AT1G20140.1	12169662
AT1G06110.1	CDY29370	AT1G20140.1	12169662
AT1G06110.1	CDY43408	AT1G20140.1	12169662
AT1G06110.1	CDY44209	AT1G20140.1	12169662
AT1G06110.1	CDY63159	AT1G20140.1	12169662
AT1G06110.1	CDY67544	AT1G20140.1	12169662
AT1G06110.1	CDY68971	AT1G20140.1	12169662
AT1G06110.1	CDX68112	AT1G75950.1	12169662
AT1G06110.1	CDX73212	AT1G75950.1	12169662
AT1G06110.1	CDX80590	AT1G75950.1	12169662
AT1G06110.1	CDX85931	AT1G75950.1	12169662
AT1G06110.1	CDX87650	AT1G75950.1	12169662
AT1G06110.1	CDY13521	AT1G75950.1	12169662
AT1G06110.1	CDY39073	AT1G75950.1	12169662
AT1G06110.1	CDX77280	AT3G60010.1	12169662
AT1G06110.1	CDX93698	AT3G60010.1	12169662
AT1G06110.1	CDX93699	AT3G60010.1	12169662
AT1G06110.1	CDY16470	AT3G60010.1	12169662
AT1G06110.1	CDY40610	AT3G60010.1	12169662
AT1G06110.1	CDY40611	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015474.1-P	Field mustard	cytosol	96.58	92.44
CDY10172	Canola	cytosol	90.26	79.03
CDY15562	Canola	cytosol	66.84	60.05
CDX86535	Canola	cytosol	67.37	59.26
AT1G06110.1	Thale cress	cytosol	67.11	58.49
VIT_05s0102g01140.t01	Wine grape	cytosol	49.21	42.12
PGSC0003DMT400042138	Potato	cytosol	48.95	41.99
Solyc06g053340.2.1	Tomato	cytosol	48.16	41.31
KRH29609	Soybean	cytosol	47.63	40.86
KRH24605	Soybean	cytosol	46.32	39.73
GSMUA_Achr1P13390_001	Banana	cytosol	43.16	39.61
VIT_05s0102g01150.t01	Wine grape	cytosol	46.84	38.61
TraesCS4B01G084200.1	Wheat	cytosol	42.37	35.78
Os11t0265200-00	Rice	extracellular	42.89	35.67
EES09667	Sorghum	cytosol	41.84	35.41
TraesCS4D01G082100.1	Wheat	cytosol	41.58	35.27
TraesCS4A01G231800.1	Wheat	cytosol	41.32	35.04
HORVU4Hr1G014490.3	Barley	cytosol, plastid	41.84	34.95
Zm00001d049083_P002	Maize	cytosol	39.47	33.33
Os11t0264700-01	Rice	cytosol, peroxisome, plastid	34.74	29.86

Protein Annotations

EnsemblPlants:CDY47716	EnsemblPlantsGene:GSBRNA2T00087983001	Gene3D:2.60.40.1470	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:ApaG_domain	InterPro:ApaG_sf	InterPro:F-box-like_dom_sf	InterPro:IPR007474	InterPro:IPR036767	PANTHER:PTHR14289
PANTHER:PTHR14289:SF26	PFAM:PF04379	PFscan:PS51087	ProteinID:CDY47716	ProteinID:CDY47716.1	SEG:seg
SUPFAM:SSF110069	SUPFAM:SSF81383	UniParc:UPI0004EEFACB	UniProt:A0A078ICX5	MapMan:35.1	:

Description

BnaA10g04050DBnaA10g04050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICX5]

Coordinates

chrLK032731:-:82925..86042

Molecular Weight (calculated)

42401.8 Da

IEP (calculated)

5.240

GRAVY (calculated)

-0.099

Length

380 amino acids

Sequence
(BLAST)

001: MSLEDAEDLV LHMILSKVGP ENNTARVACV SKRLQVSASE ESLWSIFCSL DLNISTPLHD YIPMEILSFL QAEATLRKVT TRLLYRFVDG QELSSSSSSA
101: GCDKGPPGLI GGYSAYWHKV NVYLLPLKEV VRQTIDIMAG DHNTISKNIV VVAVSAAPSS KKMFFLDCTN GQLYTENTSS HQMLPCVPES LVCINGDQQE
201: DAMLLWLEEH GRRLQTGATK VREQDNIKSI SLFPEIPPLC SISVTNGVQV RASSVFMPEV SNHLDNPPVY SYACSIRMSL MPNFNRRHRS SWQMYSRHWV
301: VRADDAVIGD VDGEVVLLKN PLLQAKEEEF VYRCISQFPT SNLSVEGSFT FVPGSLQDPK GPQFEVNVAE FPVKLPDYIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.