Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008231.1-P | Field mustard | cytosol | 99.38 | 99.38 |
| CDY39073 | Canola | cytosol | 99.38 | 99.38 |
| CDX68112 | Canola | cytosol | 91.88 | 97.35 |
| CDX85931 | Canola | cytosol | 91.88 | 97.35 |
| CDX73212 | Canola | cytosol | 93.12 | 92.55 |
| AT1G75950.1 | Thale cress | cytosol | 92.5 | 92.5 |
| CDX87650 | Canola | cytosol | 91.25 | 90.68 |
| CDY40610 | Canola | cytosol | 72.5 | 74.36 |
| CDY44209 | Canola | cytosol | 74.38 | 73.91 |
| CDY29370 | Canola | cytosol | 74.38 | 73.91 |
| CDX93698 | Canola | cytosol | 71.25 | 73.08 |
| CDX80590 | Canola | cytosol | 71.25 | 70.81 |
| CDY40611 | Canola | cytosol | 66.25 | 70.67 |
| CDX93699 | Canola | cytosol | 68.75 | 68.75 |
| CDX77280 | Canola | cytosol | 65.0 | 65.41 |
| CDY69121 | Canola | cytosol | 53.12 | 64.89 |
| CDY16470 | Canola | cytosol | 63.12 | 63.52 |
| CDX89042 | Canola | cytosol | 62.5 | 62.89 |
| CDY63159 | Canola | cytosol | 62.5 | 62.11 |
| CDY67544 | Canola | cytosol | 62.5 | 62.11 |
| CDY01389 | Canola | cytosol | 61.88 | 61.49 |
| CDY45767 | Canola | cytosol | 55.62 | 57.79 |
| CDY43408 | Canola | cytosol | 54.38 | 57.24 |
| CDY03015 | Canola | cytosol | 53.75 | 56.95 |
| CDY68971 | Canola | cytosol | 53.75 | 56.58 |
| CDY14922 | Canola | cytosol | 57.5 | 54.76 |
| CDY04140 | Canola | cytosol | 52.5 | 52.83 |
| CDY17409 | Canola | cytosol | 51.88 | 52.2 |
| CDX96963 | Canola | cytosol | 56.88 | 48.15 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:A0A078FK66 | UniProt:A0A078FK66 | EnsemblPlants:CDY13521 | ProteinID:CDY13521 |
| ProteinID:CDY13521.1 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00077842001 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 |
| PANTHER:PTHR11165:SF89 | InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 |
| SUPFAM:SSF54695 | SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniPathway:UPA00143 | UniParc:UPI0004EB6534 |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g23320DBnaC02g23320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK66]
Coordinates
chrLK032036:-:2142..3076
Molecular Weight (calculated)
17807.9 Da
IEP (calculated)
4.149
GRAVY (calculated)
-0.339
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTKKIVLKS SDGESFEVDE AVALESQTIA HMVEDDCVDN GIPLPNVTSK ILAKVIEYCK KHVDAAASKT DAVDGGASSD DDLKAWDAEF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTAEEEEE VRRENQWAFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTAEEEEE VRRENQWAFE
001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
Arabidopsis Description
SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.