Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012486.1-P | Field mustard | cytosol | 99.77 | 99.77 |
| CDY66464 | Canola | cytosol | 96.16 | 99.3 |
| CDY36119 | Canola | cytosol | 86.46 | 90.76 |
| CDY51990 | Canola | cytosol | 86.46 | 90.54 |
| CDX84977 | Canola | cytosol | 85.55 | 90.24 |
| AT1G25280.1 | Thale cress | cytosol | 90.07 | 89.66 |
| CDY42119 | Canola | cytosol | 88.04 | 89.24 |
| CDY13913 | Canola | endoplasmic reticulum, extracellular | 5.64 | 83.33 |
| VIT_12s0055g00460.t01 | Wine grape | mitochondrion | 73.14 | 76.42 |
| KRH10476 | Soybean | cytosol, mitochondrion | 72.91 | 75.64 |
| KRH43964 | Soybean | cytosol, mitochondrion | 72.23 | 74.94 |
| Solyc10g046970.1.1 | Tomato | mitochondrion | 71.78 | 74.65 |
| PGSC0003DMT400002858 | Potato | mitochondrion | 71.56 | 74.41 |
| PGSC0003DMT400076537 | Potato | cytosol | 70.88 | 73.54 |
| Solyc01g104670.2.1 | Tomato | cytosol | 70.65 | 73.3 |
| HORVU5Hr1G023650.1 | Barley | plastid | 39.28 | 72.2 |
| GSMUA_Achr9P08860_001 | Banana | cytosol, mitochondrion | 67.27 | 69.63 |
| CDY13570 | Canola | cytosol | 66.59 | 69.41 |
| CDY45959 | Canola | cytosol | 67.04 | 69.23 |
| CDY65845 | Canola | cytosol, mitochondrion | 66.82 | 65.78 |
| CDX87562 | Canola | cytosol, mitochondrion | 66.82 | 65.63 |
| Os12t0163400-01 | Rice | cytosol | 65.46 | 65.17 |
| KXG23034 | Sorghum | cytosol, mitochondrion | 64.11 | 64.99 |
| TraesCS5A01G124100.1 | Wheat | cytosol | 63.43 | 64.01 |
| TraesCS5D01G132000.1 | Wheat | cytosol, mitochondrion | 63.21 | 63.78 |
| TraesCS5B01G123800.1 | Wheat | golgi | 62.75 | 63.33 |
| TraesCS4A01G209000.1 | Wheat | cytosol, mitochondrion | 62.53 | 62.95 |
| TraesCS4D01G110100.1 | Wheat | golgi | 62.53 | 62.95 |
| TraesCS4B01G112600.1 | Wheat | cytosol, mitochondrion | 62.3 | 62.73 |
| CDY10578 | Canola | mitochondrion | 5.87 | 61.9 |
| Zm00001d053179_P001 | Maize | cytosol | 61.85 | 61.16 |
| EES08030 | Sorghum | cytosol, mitochondrion | 61.17 | 59.43 |
| CDY46301 | Canola | cytosol | 48.76 | 57.14 |
| CDY25159 | Canola | cytosol | 48.31 | 57.07 |
| CDY27467 | Canola | cytosol | 51.02 | 56.93 |
| CDY55525 | Canola | cytosol | 51.24 | 56.47 |
| CDY65687 | Canola | cytosol, mitochondrion | 47.18 | 55.88 |
| GSMUA_Achr11P... | Banana | cytosol | 52.14 | 55.66 |
| CDY17085 | Canola | cytosol, mitochondrion | 49.44 | 55.58 |
| CDY17028 | Canola | mitochondrion, nucleus | 48.76 | 54.68 |
| CDY02510 | Canola | cytosol | 39.5 | 54.52 |
| CDY05258 | Canola | mitochondrion | 44.02 | 54.17 |
| CDY24698 | Canola | mitochondrion | 43.12 | 54.11 |
| CDY25719 | Canola | cytosol | 39.5 | 53.03 |
| CDX92589 | Canola | mitochondrion | 42.21 | 50.0 |
| CDY25863 | Canola | cytosol, mitochondrion | 42.21 | 49.6 |
| CDY45927 | Canola | cytosol, plastid | 41.76 | 49.33 |
| CDY13914 | Canola | mitochondrion | 24.38 | 44.26 |
| CDY06747 | Canola | cytosol, mitochondrion | 48.76 | 37.37 |
| CDY35067 | Canola | nucleus | 18.28 | 20.82 |
| CDY69989 | Canola | nucleus | 18.06 | 20.41 |
| CDY17084 | Canola | mitochondrion | 0.23 | 0.49 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:15.5.21 | UniProt:A0A078K2K6 | EnsemblPlants:CDY72036 | ProteinID:CDY72036 | ProteinID:CDY72036.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00023253001 |
| InterPro:IPR001810 | InterPro:IPR025659 | PFAM:PF00646 | PFAM:PF01167 | PRINTS:PR01573 | ScanProsite:PS01200 |
| ScanProsite:PS01201 | PANTHER:PTHR16517 | PANTHER:PTHR16517:SF45 | SUPFAM:SSF54518 | SUPFAM:SSF81383 | InterPro:Tubby-like_C |
| InterPro:Tubby_C | InterPro:Tubby_C_CS | UniParc:UPI0004EDF888 | SEG:seg | : | : |
Description
BnaA07g36880DTubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A078K2K6]
Coordinates
chrLK048669:-:98..2262
Molecular Weight (calculated)
49837.7 Da
IEP (calculated)
10.038
GRAVY (calculated)
-0.389
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFRSIVQDL RDGLGSLSRR SFDFRLHHKG KSHGSSFREY SSSLDLSPLI VQTSRWANLP PELLLDVIKR LEESESNWPA RKHVVACASV CRSWRAMCQE
101: IVLCPEISGK LTFPVSLKQP GPRDAMIQCF IKRDKSKLTF HLFLCLSPAL IVENGKFLLS AKRTRRTTRT EYIISMDAEN ISRSSNSYLG KLRSNFLGTK
201: FLVYDTQPPP DTSSSSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPTSSLEPGG SVPNQPEKLL PPPPRSFDDS
301: FRSNISFSKS SFDHRSVDFS SSRFSEMGVP CEEDQGETSF KPLVLKNKQP RWHEQLQCWC LNFRGRVTVA SVKNFQLVAV RQPPPTQVAG SSAPAAPPEQ
401: DKVILQFGKV GKDMFTMDYR YPLSAFQAFA ICLSSFDTKL ACE
101: IVLCPEISGK LTFPVSLKQP GPRDAMIQCF IKRDKSKLTF HLFLCLSPAL IVENGKFLLS AKRTRRTTRT EYIISMDAEN ISRSSNSYLG KLRSNFLGTK
201: FLVYDTQPPP DTSSSSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPTSSLEPGG SVPNQPEKLL PPPPRSFDDS
301: FRSNISFSKS SFDHRSVDFS SSRFSEMGVP CEEDQGETSF KPLVLKNKQP RWHEQLQCWC LNFRGRVTVA SVKNFQLVAV RQPPPTQVAG SSAPAAPPEQ
401: DKVILQFGKV GKDMFTMDYR YPLSAFQAFA ICLSSFDTKL ACE
001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE
Arabidopsis Description
TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.