CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY30290
CDY30837
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06380.1	CDX68112	AT1G75950.1	15064372
AT3G06380.1	CDX73212	AT1G75950.1	15064372
AT3G06380.1	CDX80590	AT1G75950.1	15064372
AT3G06380.1	CDX85931	AT1G75950.1	15064372
AT3G06380.1	CDX87650	AT1G75950.1	15064372
AT3G06380.1	CDY13521	AT1G75950.1	15064372
AT3G06380.1	CDY39073	AT1G75950.1	15064372
AT3G06380.1	CDX68112	AT1G75950.1	25168737
AT3G06380.1	CDX73212	AT1G75950.1	25168737
AT3G06380.1	CDX80590	AT1G75950.1	25168737
AT3G06380.1	CDX85931	AT1G75950.1	25168737
AT3G06380.1	CDX87650	AT1G75950.1	25168737
AT3G06380.1	CDY13521	AT1G75950.1	25168737
AT3G06380.1	CDY39073	AT1G75950.1	25168737
AT3G06380.1	CDY30290	AT2G04620.1	16792696
AT3G06380.1	CDY30837	AT2G04620.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13913	Canola	endoplasmic reticulum, extracellular	8.5	100.0
Bra020754.1-P	Field mustard	cytosol	96.6	99.13
CDY05258	Canola	mitochondrion	97.73	95.83
AT3G06380.1	Thale cress	mitochondrion	81.59	75.79
CDX92589	Canola	mitochondrion	75.92	71.66
CDY13914	Canola	mitochondrion	49.29	71.31
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	10.48	62.71
CDY27467	Canola	cytosol	62.32	55.42
CDY55525	Canola	cytosol	62.04	54.48
CDY02510	Canola	cytosol	46.46	51.09
CDY10578	Canola	mitochondrion	5.95	50.0
CDY25719	Canola	cytosol	46.18	49.39
CDY25159	Canola	cytosol	51.84	48.8
CDY46301	Canola	cytosol	51.84	48.41
CDY65687	Canola	cytosol, mitochondrion	50.42	47.59
CDY17028	Canola	mitochondrion, nucleus	51.27	45.82
CDY17085	Canola	cytosol, mitochondrion	50.71	45.43
CDY25863	Canola	cytosol, mitochondrion	48.44	45.36
CDY45927	Canola	cytosol, plastid	48.16	45.33
CDY36119	Canola	cytosol	53.54	44.79
CDX84977	Canola	cytosol	53.26	44.76
CDY51990	Canola	cytosol	53.54	44.68
CDY66464	Canola	cytosol	54.11	44.52
CDY13570	Canola	cytosol	53.26	44.24
CDY42119	Canola	cytosol	54.67	44.16
CDY45959	Canola	cytosol	53.54	44.06
CDY72036	Canola	cytosol	54.11	43.12
CDY65845	Canola	cytosol, mitochondrion	52.97	41.56
CDX87562	Canola	cytosol, mitochondrion	52.97	41.46
CDY06747	Canola	cytosol, mitochondrion	51.27	31.31
CDY35067	Canola	nucleus	20.4	18.51
CDY69989	Canola	nucleus	20.11	18.11
CDY17084	Canola	mitochondrion	0.28	0.49

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078GJC4	EnsemblPlants:CDY24698	ProteinID:CDY24698
ProteinID:CDY24698.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00027082001	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF73	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0004EDE944	:	:	:

Description

BnaA05g30970DBnaA05g30970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJC4]

Coordinates

chrLK032162:-:510875..513197

Molecular Weight (calculated)

39798.2 Da

IEP (calculated)

10.338

GRAVY (calculated)

-0.290

Length

353 amino acids

Sequence
(BLAST)

001: MTIRSLIQEM RSRPHRVVHE AASPTPGSEP FRWSELPDEL LREILIRVES ADDGDWPSRR SVVACAGVCR VWRMIVKEIV GVPELSSKLT FPISLKQPGP
101: RGSLVQCFIK RNRNTQSYHL YLGLTNSLTD NGKFLLAACK LKRATCTDYI ISLRSDDMSR RSNAYLGRVR SNFIGTKFTV FEGNLMPQTR SSKMVKSRSS
201: NLMKVSPRAP SGSYPVAHIS YELNVLGSRG PRRMRCVMDT LPTSLMHPQR AAGSSNSLRD PPLVLSNKTP RWHEQLRCWC LNFHGRVTVA SVKNFQLVAV
301: GDRETEQATS ERIILQFGKV GKDMFTMDYG YPISAFQAFA ICLSSFETRI ACE

Best Arabidopsis Sequence Match ( AT3G06380.1 )
(BLAST)

001: MTFRSLLQEM RSRPHRVVHA AASTANSSDP FSWSELPEEL LREILIRVET VDGGDWPSRR NVVACAGVCR SWRILTKEIV AVPEFSSKLT FPISLKQSGP
101: RDSLVQCFIK RNRNTQSYHL YLGLTTSLTD NGKFLLAASK LKRATCTDYI ISLRSDDISK RSNAYLGRMR SNFLGTKFTV FDGSQTGAAK MQKSRSSNFI
201: KVSPRVPQGS YPIAHISYEL NVLGSRGPRR MRCIMDTIPM SIVESRGVVA STSISSFSSR SSPVFRSHSK PLRSNSASCS DSGNNLGDPP LVLSNKAPRW
301: HEQLRCWCLN FHGRVTVASV KNFQLVAVSD CEAGQTSERI ILQFGKVGKD MFTMDYGYPI SAFQAFAICL SSFETRIACE

Arabidopsis Description

TULP9Tubby-like F-box protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.