CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY30290
CDY30837

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16070.1	CDY30290	AT2G04620.1	16792696
AT1G16070.1	CDY30837	AT2G04620.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026081.1-P	Field mustard	nucleus	95.41	96.14
CDY35067	Canola	nucleus	94.9	95.63
AT1G16070.1	Thale cress	nucleus	87.76	86.65
VIT_09s0018g01630.t01	Wine grape	cytosol	55.61	57.82
KRH23693	Soybean	plastid	47.7	52.53
Solyc03g117730.2.1	Tomato	cytosol	52.3	50.49
PGSC0003DMT400036862	Potato	nucleus	52.04	49.04
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	43.88	46.87
TraesCS6B01G177300.1	Wheat	plastid	46.17	46.17
HORVU6Hr1G029710.3	Barley	plastid	45.41	45.06
Zm00001d015485_P001	Maize	plastid	44.64	43.53
KXG29622	Sorghum	plastid	45.66	42.22
TraesCS6D01G138700.1	Wheat	plastid	41.84	42.05
TraesCS6A01G149400.1	Wheat	plastid	41.58	40.75
CDY13913	Canola	endoplasmic reticulum, extracellular	2.81	36.67
CDY10578	Canola	mitochondrion	3.06	28.57
Os02t0179400-00	Rice	nucleus	29.59	28.09
CDY02510	Canola	cytosol	17.35	21.18
CDY25719	Canola	cytosol	17.6	20.91
CDY65687	Canola	cytosol, mitochondrion	19.39	20.32
CDY45927	Canola	cytosol, plastid	19.39	20.27
CDY24698	Canola	mitochondrion	18.11	20.11
CDY25863	Canola	cytosol, mitochondrion	19.13	19.89
CDY13570	Canola	cytosol	21.43	19.76
CDY05258	Canola	mitochondrion	18.11	19.72
CDY55525	Canola	cytosol	20.15	19.65
CDY27467	Canola	cytosol	19.9	19.65
CDY25159	Canola	cytosol	18.62	19.47
CDY45959	Canola	cytosol	20.92	19.11
CDY46301	Canola	cytosol	18.37	19.05
CDY42119	Canola	cytosol	21.17	18.99
CDY17028	Canola	mitochondrion, nucleus	19.13	18.99
CDY36119	Canola	cytosol	20.41	18.96
CDY51990	Canola	cytosol	20.41	18.91
CDX84977	Canola	cytosol	20.15	18.81
CDY17085	Canola	cytosol, mitochondrion	18.88	18.78
CDY66464	Canola	cytosol	20.41	18.65
CDY65845	Canola	cytosol, mitochondrion	20.92	18.22
CDY72036	Canola	cytosol	20.41	18.06
CDX87562	Canola	cytosol, mitochondrion	20.66	17.96
CDX92589	Canola	mitochondrion	17.09	17.91
CDY13914	Canola	mitochondrion	8.93	14.34
CDY06747	Canola	cytosol, mitochondrion	19.64	13.32
CDY17084	Canola	mitochondrion	0.26	0.49

Protein Annotations

EnsemblPlants:CDY69989	EnsemblPlantsGene:GSBRNA2T00094230001	Gene3D:3.20.90.10	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C
PANTHER:PTHR16517	PANTHER:PTHR16517:SF27	PFAM:PF01167	PRINTS:PR01573	ProteinID:CDY69989	ProteinID:CDY69989.1
SUPFAM:SSF54518	UniParc:UPI0004EDB4D2	UniProt:A0A078JT28	MapMan:15.5.21	:	:

Description

BnaCnng66230DBnaCnng66230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JT28]

Coordinates

chrLK040878:-:1117..2998

Molecular Weight (calculated)

44099.7 Da

IEP (calculated)

10.011

GRAVY (calculated)

-0.603

Length

392 amino acids

Sequence
(BLAST)

001: MTGSRKENDL LEDDKENVET VSRSVSVKKG EDKENVSPGN SSASVETKKQ DRALKSRSMK GDSKFPNEVT NFKSFSTGGR AALKQTSLQV CMQLNSDEVD
101: KGVKTWTSVD SEHLKVWEFS DSEAAPASSW STLPNRALLC KTLPLDVGRC TCLIVKEKSP EGLSDGSVYS LYTHEGRGRK DRKLAVAYHR RRNGKSVFRI
201: AQNVKGLLCS SDESYVGSMT ANLMGSKYYI WDKGVRVGSV GKMVKPLLSV VIFTPTIATW TGSYRRMRAL LPKQQPVQKN NTKQVQQASK LPLDWLENKD
301: QVQELCSRIP HYNKISKQHE LDFRDRGRTS LKIQSSVKNF QLTLTENPRQ TILQMGRVDK SKYVIDFRYP FSGYQSFCIC LASIDSKLCC TV

Best Arabidopsis Sequence Match ( AT1G16070.1 )
(BLAST)

001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV

Arabidopsis Description

TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.