Factsheet for Bra026081.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025618.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16070.1	Bra025618.1-P	AT2G04620.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35067	Canola	nucleus	98.46	98.46
CDY69989	Canola	nucleus	96.14	95.41
AT1G16070.1	Thale cress	nucleus	88.95	87.15
VIT_09s0018g01630.t01	Wine grape	cytosol	56.04	57.82
KRH23693	Soybean	plastid	47.3	51.69
Solyc03g117730.2.1	Tomato	cytosol	52.7	50.49
PGSC0003DMT400036862	Potato	nucleus	52.44	49.04
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	43.7	46.32
TraesCS6B01G177300.1	Wheat	plastid	46.53	46.17
HORVU6Hr1G029710.3	Barley	plastid	46.02	45.32
Zm00001d015485_P001	Maize	plastid	45.76	44.28
KXG29622	Sorghum	plastid	46.79	42.92
TraesCS6D01G138700.1	Wheat	plastid	41.9	41.79
TraesCS6A01G149400.1	Wheat	plastid	41.65	40.5
Os02t0179400-00	Rice	nucleus	30.85	29.06
Bra020754.1-P	Field mustard	cytosol	17.99	20.35
Bra021446.1-P	Field mustard	cytosol	20.57	19.9
Bra040862.1-P	Field mustard	mitochondrion, nucleus	20.05	19.7
Bra041095.1-P	Field mustard	cytosol, mitochondrion	19.02	19.63
Bra015624.1-P	Field mustard	cytosol, mitochondrion	20.31	19.6
Bra039620.1-P	Field mustard	cytosol	18.77	19.31
Bra024763.1-P	Field mustard	cytosol	21.34	18.95
Bra030942.1-P	Field mustard	mitochondrion	18.77	18.62
Bra010985.1-P	Field mustard	cytosol	20.82	18.45
Bra040803.1-P	Field mustard	cytosol	21.08	18.34
Bra012486.1-P	Field mustard	cytosol	20.82	18.28
Bra015711.1-P	Field mustard	cytosol, mitochondrion	20.82	17.42
Bra002179.1-P	Field mustard	mitochondrion	17.48	17.04

Protein Annotations

EnsemblPlants:Bra026081.1	EnsemblPlants:Bra026081.1-P	EnsemblPlantsGene:Bra026081	Gene3D:3.20.90.10	InterPro:IPR025659	InterPro:Tubby-like_C
InterPro:Tubby_C	PANTHER:PTHR16517	PANTHER:PTHR16517:SF27	PFAM:PF01167	PRINTS:PR01573	SUPFAM:SSF54518
UniParc:UPI000253F17F	UniProt:M4EBC2	MapMan:15.5.21	:	:	:

Description

AT1G16070 (E=1e-195) AtTLP8 | AtTLP8 (TUBBY LIKE PROTEIN 8); transcription factor

Coordinates

chrA06:-:6216501..6218407

Molecular Weight (calculated)

43842.4 Da

IEP (calculated)

10.110

GRAVY (calculated)

-0.619

Length

389 amino acids

Sequence
(BLAST)

001: MAGSRKENDE NKENVETVSR SVSVKKGEDK ENVSPENSSA SVETKKQDRA LKSKSMKGDS KFPNEVTNFK SFSTGGRTAL KQTSLQVCMQ LNSDEVDKGM
101: KTWTSVDSEH LKVWEFSDSE AAPASSWSTL PNRALLCKTL PLDVGRCTCL IVKEQSPEGL RDGSVYSLYT HEGRGRKDRK LAVAYHRRRK GKSVFRIAQN
201: VKGLLCSSDE SYVGSMTANL MGSKYYIWDK GVRVGSVGKI VKPLLSVVIF TPTIATWTGS YRRMRALLPK QQPVQKNNSK QVQQASKLPL DWLENKDQVQ
301: ELCSRIPHYN KISKQHELDF RDRGRTSLKI QSSVKNFQLT LTENSRQTIL QMGRVDKAKY VIDFRYPFSG YQAFCICLAS IDSKLCCTV

Best Arabidopsis Sequence Match ( AT1G16070.1 )
(BLAST)

001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV

Arabidopsis Description

TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.