Factsheet for Zm00001d015485_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d032262_P001
Zm00001d050335_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16070.1	Zm00001d032262_P001	AT2G04620.1	16792696
AT1G16070.1	Zm00001d050335_P001	AT2G04620.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29622	Sorghum	plastid	92.54	87.74
TraesCS6B01G177300.1	Wheat	plastid	75.87	77.81
HORVU6Hr1G029710.3	Barley	plastid	75.12	76.46
TraesCS6D01G138700.1	Wheat	plastid	69.65	71.79
TraesCS6A01G149400.1	Wheat	plastid	70.4	70.75
VIT_09s0018g01630.t01	Wine grape	cytosol	52.99	56.5
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	49.75	54.5
KRH23693	Soybean	plastid	45.02	50.84
Os02t0179400-00	Rice	nucleus	50.99	49.64
Solyc03g117730.2.1	Tomato	cytosol	48.76	48.28
PGSC0003DMT400036862	Potato	nucleus	49.25	47.6
CDY35067	Canola	nucleus	44.53	46.02
Bra026081.1-P	Field mustard	nucleus	44.28	45.76
AT1G16070.1	Thale cress	nucleus	44.78	45.34
CDY69989	Canola	nucleus	43.53	44.64
Zm00001d017773_P001	Maize	cytosol	22.39	20.59
Zm00001d051568_P001	Maize	cytosol	22.14	20.41
Zm00001d011578_P003	Maize	nucleus	18.16	20.39
Zm00001d038691_P001	Maize	mitochondrion	17.91	19.62
Zm00001d002896_P001	Maize	cytosol	21.39	19.55
Zm00001d043895_P003	Maize	cytosol	18.16	19.31
Zm00001d029165_P004	Maize	cytosol, plastid	18.91	18.95
Zm00001d052765_P002	Maize	mitochondrion	20.65	18.2
Zm00001d053179_P001	Maize	cytosol	19.9	17.86
Zm00001d038310_P003	Maize	mitochondrion	20.15	16.27
Zm00001d042724_P002	Maize	mitochondrion	18.91	15.83
Zm00001d007106_P001	Maize	cytosol	12.19	15.71
Zm00001d033948_P004	Maize	cytosol	4.48	9.94
Zm00001d029092_P001	Maize	mitochondrion	6.22	7.23
Zm00001d047019_P001	Maize	mitochondrion	6.22	7.23
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	3.73	5.47

Protein Annotations

EMBL:BT084867	EMBL:KJ727980	EnsemblPlants:Zm00001d015485_P001	EnsemblPlants:Zm00001d015485_T001	EnsemblPlantsGene:Zm00001d015485	EntrezGene:100501242
Gene3D:3.20.90.10	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C	PANTHER:PTHR16517	PANTHER:PTHR16517:SF27
PFAM:PF01167	PRINTS:PR01573	ProteinID:AQK69008.1	SEG:seg	SUPFAM:SSF54518	UniParc:UPI0001A4C49C
UniProt:C4J220	MapMan:15.5.21	:	:	:	:

Description

TUB-transcription factor 8Tubby-like protein 8

Coordinates

chr5:-:93095266..93097731

Molecular Weight (calculated)

43831.6 Da

IEP (calculated)

10.711

GRAVY (calculated)

-0.451

Length

402 amino acids

Sequence
(BLAST)

001: MATVPNPKTT RARREPALRP RSNNVAAAPA PAPAVASVRR GPAASAEKEN QPPKSLGHGK AAAAATAAEP PKPAEPAPVV APPPPPLRPS SLQLRMKDEA
101: AAAALPAFVV GPRGRELLPP PSSNYEAWDL SDSESAPASS WATLPNRALL CRPLPQDVGR CTCVIAREAA TGARGVALYS LYTNEGQGRQ DRKLAVARHR
201: RRRGRSEFVV AQNQDGIFCT ADTSFLGAVR ANLVGSKYRI WGQGDELKNQ SKRLLAVVAF APTITTLTGS FRSLRAWIPK NQSMQLKANS SAQIQHVSGL
301: PKDWQEKKSR ADQLCSRAPF YNHMTKRYEL DFRERAGRMG YKVQTSVKNF QMTLEENGRQ TVLQLGRVGK SKYIMDFRYP LTGYQAFCIC LASIDAKLCC
401: TL

Best Arabidopsis Sequence Match ( AT1G16070.1 )
(BLAST)

001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV

Arabidopsis Description

TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.