Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16070.1 | CDY30290 | AT2G04620.1 | 16792696 |
| AT1G16070.1 | CDY30837 | AT2G04620.1 | 16792696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026081.1-P | Field mustard | nucleus | 98.46 | 98.46 |
| CDY69989 | Canola | nucleus | 95.63 | 94.9 |
| AT1G16070.1 | Thale cress | nucleus | 88.95 | 87.15 |
| VIT_09s0018g01630.t01 | Wine grape | cytosol | 56.04 | 57.82 |
| KRH23693 | Soybean | plastid | 47.81 | 52.25 |
| Solyc03g117730.2.1 | Tomato | cytosol | 52.7 | 50.49 |
| PGSC0003DMT400036862 | Potato | nucleus | 52.44 | 49.04 |
| GSMUA_Achr1P10180_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 43.96 | 46.59 |
| TraesCS6B01G177300.1 | Wheat | plastid | 46.53 | 46.17 |
| HORVU6Hr1G029710.3 | Barley | plastid | 45.76 | 45.06 |
| Zm00001d015485_P001 | Maize | plastid | 46.02 | 44.53 |
| KXG29622 | Sorghum | plastid | 47.04 | 43.16 |
| TraesCS6D01G138700.1 | Wheat | plastid | 41.9 | 41.79 |
| TraesCS6A01G149400.1 | Wheat | plastid | 41.65 | 40.5 |
| CDY13913 | Canola | endoplasmic reticulum, extracellular | 3.08 | 40.0 |
| CDY10578 | Canola | mitochondrion | 3.34 | 30.95 |
| Os02t0179400-00 | Rice | nucleus | 30.85 | 29.06 |
| CDY65687 | Canola | cytosol, mitochondrion | 20.57 | 21.39 |
| CDY02510 | Canola | cytosol | 17.22 | 20.87 |
| CDY25719 | Canola | cytosol | 17.48 | 20.61 |
| CDY24698 | Canola | mitochondrion | 18.51 | 20.4 |
| CDY05258 | Canola | mitochondrion | 18.51 | 20.0 |
| CDY27467 | Canola | cytosol | 20.31 | 19.9 |
| CDY17028 | Canola | mitochondrion, nucleus | 20.05 | 19.75 |
| CDY45927 | Canola | cytosol, plastid | 19.02 | 19.73 |
| CDY55525 | Canola | cytosol | 20.31 | 19.65 |
| CDY25159 | Canola | cytosol | 18.77 | 19.47 |
| CDY25863 | Canola | cytosol, mitochondrion | 18.77 | 19.36 |
| CDY17085 | Canola | cytosol, mitochondrion | 19.54 | 19.29 |
| CDY36119 | Canola | cytosol | 20.82 | 19.19 |
| CDY51990 | Canola | cytosol | 20.82 | 19.15 |
| CDY13570 | Canola | cytosol | 20.82 | 19.06 |
| CDY46301 | Canola | cytosol | 18.51 | 19.05 |
| CDY42119 | Canola | cytosol | 21.34 | 18.99 |
| CDY45959 | Canola | cytosol | 20.82 | 18.88 |
| CDX84977 | Canola | cytosol | 20.31 | 18.81 |
| CDY66464 | Canola | cytosol | 20.57 | 18.65 |
| CDY72036 | Canola | cytosol | 20.82 | 18.28 |
| CDY65845 | Canola | cytosol, mitochondrion | 20.82 | 18.0 |
| CDX92589 | Canola | mitochondrion | 17.22 | 17.91 |
| CDX87562 | Canola | cytosol, mitochondrion | 20.57 | 17.74 |
| CDY13914 | Canola | mitochondrion | 8.74 | 13.93 |
| CDY06747 | Canola | cytosol, mitochondrion | 20.05 | 13.49 |
| CDY17084 | Canola | mitochondrion | 0.26 | 0.49 |
Protein Annotations
| EnsemblPlants:CDY35067 | EnsemblPlantsGene:GSBRNA2T00057937001 | Gene3D:3.20.90.10 | InterPro:IPR025659 | InterPro:Tubby-like_C | InterPro:Tubby_C |
| PANTHER:PTHR16517 | PANTHER:PTHR16517:SF27 | PFAM:PF01167 | PRINTS:PR01573 | ProteinID:CDY35067 | ProteinID:CDY35067.1 |
| SUPFAM:SSF54518 | UniParc:UPI0004EE1A4E | UniProt:A0A078HBD0 | MapMan:15.5.21 | : | : |
Description
BnaA06g10770DBnaA06g10770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBD0]
Coordinates
chrLK032346:-:80852..82743
Molecular Weight (calculated)
43854.4 Da
IEP (calculated)
10.066
GRAVY (calculated)
-0.623
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSRKENDE NKENVETVSR SVSVKKGEDK ENVSPENSSA SVETKKQDRA LKSKSMKGDS KFPNEVTNFK SFSTGGRTAL KQTSLQVCMQ LNSDEVDKGM
101: KTWTSVDSEH LKVWEFSDSE AAPASSWSTL PNRALLCKTL PLDVGRCTCL IVKEQSPEGL RDGSVYSLYT HEGRGRKDRK LAVAYHRRRN GKSVFRIAQN
201: VKGLLCSSDE SYVGSMTANL MGSKYYIWDK GVRIGSVGKM VKPLLSVVIF TPTITTWTGS YRRMRALLPK QQPVQKTNSK QVQQASKLPL DWLENKDQVQ
301: ELCSRIPHYN KISKQNELDF RDRGRTSLKI QSSVKNFQLT LTENSRQTIL QMGRVDKAKY VIDFRYPFSG YQAFCICLAS IDSKLCCTV
101: KTWTSVDSEH LKVWEFSDSE AAPASSWSTL PNRALLCKTL PLDVGRCTCL IVKEQSPEGL RDGSVYSLYT HEGRGRKDRK LAVAYHRRRN GKSVFRIAQN
201: VKGLLCSSDE SYVGSMTANL MGSKYYIWDK GVRIGSVGKM VKPLLSVVIF TPTITTWTGS YRRMRALLPK QQPVQKTNSK QVQQASKLPL DWLENKDQVQ
301: ELCSRIPHYN KISKQNELDF RDRGRTSLKI QSSVKNFQLT LTENSRQTIL QMGRVDKAKY VIDFRYPFSG YQAFCICLAS IDSKLCCTV
001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV
Arabidopsis Description
TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.