Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35067 | Canola | nucleus | 87.15 | 88.95 |
| Bra026081.1-P | Field mustard | nucleus | 87.15 | 88.95 |
| CDY69989 | Canola | nucleus | 86.65 | 87.76 |
| VIT_09s0018g01630.t01 | Wine grape | cytosol | 55.92 | 58.89 |
| Solyc03g117730.2.1 | Tomato | cytosol | 53.15 | 51.97 |
| KRH23693 | Soybean | plastid | 46.6 | 51.97 |
| PGSC0003DMT400036862 | Potato | nucleus | 52.9 | 50.48 |
| GSMUA_Achr1P10180_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 43.83 | 47.41 |
| TraesCS6B01G177300.1 | Wheat | plastid | 46.6 | 47.19 |
| HORVU6Hr1G029710.3 | Barley | plastid | 45.59 | 45.82 |
| Zm00001d015485_P001 | Maize | plastid | 45.34 | 44.78 |
| KXG29622 | Sorghum | plastid | 46.6 | 43.63 |
| TraesCS6D01G138700.1 | Wheat | plastid | 42.07 | 42.82 |
| TraesCS6A01G149400.1 | Wheat | plastid | 41.81 | 41.5 |
| Os02t0179400-00 | Rice | nucleus | 30.48 | 29.3 |
| AT2G47900.3 | Thale cress | cytosol | 21.66 | 21.13 |
| AT1G47270.1 | Thale cress | nucleus | 21.41 | 20.58 |
| AT1G53320.1 | Thale cress | mitochondrion | 18.89 | 19.79 |
| AT2G18280.2 | Thale cress | cytosol | 19.4 | 19.54 |
| AT3G06380.1 | Thale cress | mitochondrion | 18.64 | 19.47 |
| AT1G76900.1 | Thale cress | cytosol | 21.66 | 18.9 |
| AT1G43640.1 | Thale cress | cytosol | 20.4 | 18.88 |
| AT1G25280.1 | Thale cress | cytosol | 20.65 | 18.43 |
| AT5G18680.1 | Thale cress | mitochondrion | 17.13 | 17.48 |
| AT1G61940.2 | Thale cress | cytosol | 10.58 | 15.85 |
Protein Annotations
| MapMan:15.5.21 | Gene3D:3.20.90.10 | EntrezGene:838177 | UniProt:A0A178WHW0 | ProteinID:AAF18504.1 | ProteinID:AEE29406.1 |
| EMBL:AF487269 | ArrayExpress:AT1G16070 | EnsemblPlantsGene:AT1G16070 | RefSeq:AT1G16070 | TAIR:AT1G16070 | RefSeq:AT1G16070-TAIR-G |
| EnsemblPlants:AT1G16070.1 | TAIR:AT1G16070.1 | EMBL:AY120744 | Symbol:AtTLP8 | EMBL:BT025624 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008289 | GO:GO:0035091 | InterPro:IPR025659 | RefSeq:NP_173059.1 | ProteinID:OAP17969.1 |
| PFAM:PF01167 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR01573 | PANTHER:PTHR16517 | PANTHER:PTHR16517:SF27 |
| UniProt:Q9S9M8 | SUPFAM:SSF54518 | InterPro:Tubby-like_C | InterPro:Tubby_C | UniParc:UPI00000AAF61 | SEG:seg |
Description
TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
Coordinates
chr1:-:5510301..5513980
Molecular Weight (calculated)
44490.3 Da
IEP (calculated)
10.236
GRAVY (calculated)
-0.555
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.