Factsheet for AT3G06380.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020754.1-P	Field mustard	cytosol	74.21	81.98
CDY05258	Canola	mitochondrion	77.63	81.94
CDY24698	Canola	mitochondrion	75.79	81.59
AT5G18680.1	Thale cress	mitochondrion	75.26	73.52
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	10.26	66.1
AT2G47900.3	Thale cress	cytosol	59.74	55.77
AT2G18280.2	Thale cress	cytosol	49.47	47.72
AT1G53320.1	Thale cress	mitochondrion	45.26	45.38
AT1G25280.1	Thale cress	cytosol	52.11	44.49
AT1G47270.1	Thale cress	nucleus	47.63	43.83
AT1G43640.1	Thale cress	cytosol	49.21	43.59
AT1G76900.1	Thale cress	cytosol	52.11	43.52
AT1G61940.2	Thale cress	cytosol	23.42	33.58
AT1G16070.1	Thale cress	nucleus	19.47	18.64

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EntrezGene:819812	UniProt:A0A178VF20	ProteinID:AAF08576.1
ProteinID:AEE74384.1	EMBL:AF487270	ArrayExpress:AT3G06380	EnsemblPlantsGene:AT3G06380	RefSeq:AT3G06380	TAIR:AT3G06380
RefSeq:AT3G06380-TAIR-G	EnsemblPlants:AT3G06380.1	TAIR:AT3G06380.1	Symbol:ATTLP9	Unigene:At.46725	EMBL:BT026465
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009620
GO:GO:0009719	GO:GO:0009738	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0035091
InterPro:IPR001810	InterPro:IPR025659	RefSeq:NP_187289.1	ProteinID:OAP04859.1	PFAM:PF00646	PFAM:PF01167
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF73	UniProt:Q9SQU1	SUPFAM:SSF54518
SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI00000A4534	SEG:seg

Description

TULP9Tubby-like F-box protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU1]

Coordinates

chr3:+:1936073..1938221

Molecular Weight (calculated)

42312.7 Da

IEP (calculated)

10.217

GRAVY (calculated)

-0.231

Length

380 amino acids

Sequence
(BLAST)

001: MTFRSLLQEM RSRPHRVVHA AASTANSSDP FSWSELPEEL LREILIRVET VDGGDWPSRR NVVACAGVCR SWRILTKEIV AVPEFSSKLT FPISLKQSGP
101: RDSLVQCFIK RNRNTQSYHL YLGLTTSLTD NGKFLLAASK LKRATCTDYI ISLRSDDISK RSNAYLGRMR SNFLGTKFTV FDGSQTGAAK MQKSRSSNFI
201: KVSPRVPQGS YPIAHISYEL NVLGSRGPRR MRCIMDTIPM SIVESRGVVA STSISSFSSR SSPVFRSHSK PLRSNSASCS DSGNNLGDPP LVLSNKAPRW
301: HEQLRCWCLN FHGRVTVASV KNFQLVAVSD CEAGQTSERI ILQFGKVGKD MFTMDYGYPI SAFQAFAICL SSFETRIACE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.