Factsheet for VIT_12s0028g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 3
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g02030.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06380.1	VIT_14s0066g02030.t01	AT2G04620.1	16792696
AT3G06380.1	VIT_18s0001g14860.t01	AT5G42190.1	25168737
AT5G18680.1	VIT_18s0001g14860.t01	AT5G42190.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g01060.t01	Wine grape	mitochondrion	79.66	87.04
VIT_05s0020g01930.t01	Wine grape	cytosol	77.97	13.14
VIT_07s0104g01290.t01	Wine grape	cytosol	88.14	12.84
Bra020754.1-P	Field mustard	cytosol	62.71	10.76
CDY24698	Canola	mitochondrion	62.71	10.48
CDY05258	Canola	mitochondrion	62.71	10.28
AT3G06380.1	Thale cress	mitochondrion	66.1	10.26
CDX92589	Canola	mitochondrion	64.41	10.16
VIT_18s0001g12660.t01	Wine grape	cytosol	71.19	10.1
AT5G18680.1	Thale cress	mitochondrion	64.41	9.77
VIT_04s0023g01950.t01	Wine grape	cytosol	67.8	9.69
VIT_12s0055g00460.t01	Wine grape	mitochondrion	69.49	9.67
Bra002179.1-P	Field mustard	mitochondrion	64.41	9.52
VIT_19s0014g01250.t01	Wine grape	mitochondrion	64.41	9.48
VIT_18s0072g00630.t01	Wine grape	cytosol	64.41	8.94
VIT_00s0426g00050.t01	Wine grape	extracellular	13.56	5.03
VIT_09s0018g01630.t01	Wine grape	cytosol	30.51	4.77
CDY13913	Canola	endoplasmic reticulum, extracellular	1.69	3.33
CDY13914	Canola	mitochondrion	3.39	0.82
VIT_01s0010g01050.t01	Wine grape	cytosol	1.69	0.74

Protein Annotations

ArrayExpress:VIT_12s0028g00190	EMBL:FN596011	EnsemblPlants:VIT_12s0028g00190.t01	EnsemblPlantsGene:VIT_12s0028g00190	Gene3D:3.20.90.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	GO:GO:0035091	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C
PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	PFAM:PF01167	PRINTS:PR01573	ProteinID:CCB57240	ProteinID:CCB57240.1
SUPFAM:SSF54518	UniParc:UPI0002108B6A	UniProt:F6HRD2	MapMan:15.5.21	:	:

Description

No Description!

Coordinates

chr12_random:+:804971..806291

Molecular Weight (calculated)

6671.3 Da

IEP (calculated)

9.611

GRAVY (calculated)

0.171

Length

59 amino acids

Sequence
(BLAST)

1: MLVLKKLALR WHEQLQCWCL NFSGRVTVAS VKNFQLVVSA KNGVAGQEHE NVILQFGKC

Best Arabidopsis Sequence Match ( AT2G47900.1 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.