Factsheet for VIT_18s0072g00630.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G023650.1	Barley	plastid	51.76	91.29
VIT_12s0055g00460.t01	Wine grape	mitochondrion	87.53	87.74
KRH08694	Soybean	mitochondrion	87.06	87.26
KRH70303	Soybean	cytosol	86.59	86.79
KRG91652	Soybean	cytosol, mitochondrion	87.06	86.05
KRH35144	Soybean	cytosol, mitochondrion	87.06	86.05
PGSC0003DMT400061933	Potato	cytosol	84.47	84.27
Solyc04g071440.2.1	Tomato	mitochondrion	84.24	84.04
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	80.71	80.14
Os12t0163400-01	Rice	cytosol	77.88	74.38
KXG23034	Sorghum	cytosol, mitochondrion	75.76	73.68
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	75.06	72.5
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	75.06	72.5
TraesCS4D01G110100.1	Wheat	golgi	75.06	72.5
TraesCS5A01G124100.1	Wheat	cytosol	74.35	71.98
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	74.35	71.98
TraesCS5B01G123800.1	Wheat	golgi	74.12	71.75
Zm00001d053179_P001	Maize	cytosol	73.88	70.09
EES08030	Sorghum	cytosol, mitochondrion	73.18	68.2
VIT_01s0010g01060.t01	Wine grape	mitochondrion	8.47	66.67
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	8.94	64.41
VIT_05s0020g01930.t01	Wine grape	cytosol	52.71	64.0
GSMUA_Achr11P...	Banana	cytosol	61.18	62.65
VIT_07s0104g01290.t01	Wine grape	cytosol	58.59	61.48
VIT_04s0023g01950.t01	Wine grape	cytosol	55.06	56.66
VIT_18s0001g12660.t01	Wine grape	cytosol	54.12	55.29
VIT_19s0014g01250.t01	Wine grape	mitochondrion	44.71	47.38
VIT_01s0010g01050.t01	Wine grape	cytosol	13.41	42.22
VIT_00s0426g00050.t01	Wine grape	extracellular	13.41	35.85
VIT_09s0018g01630.t01	Wine grape	cytosol	22.12	24.93

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100246937	wikigene:100246937	MapMan:15.5.21	ProteinID:CCB44869	ProteinID:CCB44869.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6GY33	EMBL:FN594968	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659	EntrezGene:LOC100246937
wikigene:LOC100246937	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF31	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI0002108383	ArrayExpress:VIT_18s0072g00630	EnsemblPlantsGene:VIT_18s0072g00630	EnsemblPlants:VIT_18s0072g00630.t01	unigene:Vvi.5564
RefSeq:XP_002267914	RefSeq:XP_002267914.1	SEG:seg	:	:	:

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:F6GY33]

Coordinates

chr18:-:19867324..19871772

Molecular Weight (calculated)

47844.2 Da

IEP (calculated)

10.041

GRAVY (calculated)

-0.452

Length

425 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSLSRR SFDVRLPGHH RGKSHGSVHE LQDQPLVVQN SRWAGLPPEL LRDVIKRLEA SESTWPSRKH VVACAAVCRS WREMCKEIVK
101: SPEFSGKLTF PISLKQAWPR DGTIQCFIKR DKSNLTYHLF LCLSPALLVE NGKFLLSAKR NRRTTCTEYV ISMDADNISR SSSTYIGKLR SNFLGTKFII
201: YDTQPPYNGS QLSPPGRTSR RFYSKKVSPK VPTGSYNIAQ VTYELNVLGT RGPRRMHCTM HSIPASSLEP GGTVPGQAEL LPRNLEDSFR SISFSKSIDN
301: STEFSSSRFS DIIGPRDEED EGKDRPLVLR NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAATQPAAG APTPSQPPAS DHDKIILQFG KVGKDMFTMD
401: YRYPLSAFQA FAICLSSFDT KLACE

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.