Factsheet for PGSC0003DMT400061933

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g071440.2.1	Tomato	mitochondrion	99.53	99.53
VIT_18s0072g00630.t01	Wine grape	cytosol	84.27	84.47
HORVU5Hr1G023650.1	Barley	plastid	47.18	83.4
KRH08694	Soybean	mitochondrion	81.22	81.6
KRH70303	Soybean	cytosol	81.22	81.6
KRG91652	Soybean	cytosol, mitochondrion	81.92	81.16
KRH35144	Soybean	cytosol, mitochondrion	81.69	80.93
PGSC0003DMT400076537	Potato	cytosol	78.87	78.69
PGSC0003DMT400002858	Potato	mitochondrion	77.0	77.0
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	75.59	75.23
TraesCS4D01G110100.1	Wheat	golgi	74.18	71.82
KXG23034	Sorghum	cytosol, mitochondrion	73.24	71.4
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	73.71	71.36
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	73.71	71.36
Os12t0163400-01	Rice	cytosol	74.41	71.24
TraesCS5A01G124100.1	Wheat	cytosol	73.0	70.84
TraesCS5B01G123800.1	Wheat	golgi	72.77	70.61
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	72.54	70.39
Zm00001d053179_P001	Maize	cytosol	72.54	68.97
EES08030	Sorghum	cytosol, mitochondrion	71.6	66.89
GSMUA_Achr11P...	Banana	cytosol	59.39	60.96
PGSC0003DMT400029513	Potato	cytosol	55.16	59.34
PGSC0003DMT400027634	Potato	cytosol	50.7	55.67
PGSC0003DMT400040088	Potato	cytosol	53.29	55.37
PGSC0003DMT400009280	Potato	cytosol	52.35	54.79
PGSC0003DMT400016310	Potato	cytosol	51.41	54.61
PGSC0003DMT400058090	Potato	cytosol	51.41	53.94
PGSC0003DMT400018209	Potato	mitochondrion	45.31	50.0
PGSC0003DMT400036862	Potato	nucleus	22.77	23.32

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102587653	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	UniProt:M1C899
PFAM:PF00646	PFAM:PF01167	EnsemblPlantsGene:PGSC0003DMG400024102	PGSC:PGSC0003DMG400024102	EnsemblPlants:PGSC0003DMT400061933	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF31	SUPFAM:SSF54518	SUPFAM:SSF81383
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002969AF9	RefSeq:XP_006359816.1	SEG:seg

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024102]

Coordinates

chr4:+:59996270..60000670

Molecular Weight (calculated)

47603.0 Da

IEP (calculated)

9.899

GRAVY (calculated)

-0.334

Length

426 amino acids

Sequence
(BLAST)

001: MSFRSIARDI RDSIGSLSRR SFEVKLSSHN RGKSQSAVHE LHDHVIVIQS SCWASLPPEL LRDVIKRLEA SESTWPARKH VVACAAVCRS WREMCQEIVQ
101: RPEFSGKLTF PISLKQPGFR DGTIQCFIRR DKSKLTYQLF LCLSPALLVE NGKFLLSAKR NRRTTCTEYI ISMNADNISR SNSSYIGKLR SNFLGTKFII
201: YDTQPPYNSS SIPPPGGSRR FYSKKVSPKV PTGTYNIAQV SYELNVLGTR GPRRMNCVMH SIPVSSLEPG GTVPGQPELL PPNLEDSFRS MSFSKSIDAS
301: TEFNSARFSD IGGPSEVDEE GKSSLLVLRN KAPRWHEQLQ CWCLNFRGRV TVASVKNFQL IAATQRAAGA PTPAQPAQSS SDQDKIILQF GKVGKDMFTM
401: DYRYPLSAFQ AFAICLSSFD TKLACE

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.