Factsheet for PGSC0003DMT400009280

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085130.2.1	Tomato	cytosol	97.54	96.59
PGSC0003DMT400016310	Potato	cytosol	79.85	81.05
PGSC0003DMT400058090	Potato	cytosol	80.59	80.79
PGSC0003DMT400040088	Potato	cytosol	79.12	78.54
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	33.91	77.53
VIT_04s0023g01950.t01	Wine grape	cytosol	77.64	76.51
GSMUA_Achr2P23080_001	Banana	cytosol	25.06	75.0
KRH76777	Soybean	cytosol	75.18	73.73
KRH28692	Soybean	cytosol	74.2	72.95
KRH69894	Soybean	cytosol	73.22	71.98
GSMUA_Achr6P09030_001	Banana	cytosol	63.88	71.82
KRH08239	Soybean	cytosol	72.48	71.26
CDY25159	Canola	cytosol	60.44	65.6
CDY46301	Canola	cytosol	60.69	65.34
Bra039620.1-P	Field mustard	cytosol	60.69	65.34
GSMUA_Achr2P22940_001	Banana	cytosol	58.23	64.58
AT2G18280.2	Thale cress	cytosol	61.67	63.71
TraesCS6B01G300200.1	Wheat	cytosol	66.09	63.15
TraesCS6D01G252800.1	Wheat	cytosol	65.6	62.82
TraesCS6A01G272800.1	Wheat	cytosol	66.09	62.7
EES07397	Sorghum	cytosol	66.58	62.59
HORVU6Hr1G068970.3	Barley	cytosol	65.36	62.3
Zm00001d051568_P001	Maize	cytosol	66.58	62.16
Zm00001d017773_P001	Maize	cytosol	66.58	62.01
Bra015624.1-P	Field mustard	cytosol, mitochondrion	57.74	58.31
CDY65687	Canola	cytosol, mitochondrion	53.32	58.02
CDY17028	Canola	mitochondrion, nucleus	56.02	57.72
Bra040862.1-P	Field mustard	mitochondrion, nucleus	56.02	57.58
CDY10578	Canola	mitochondrion	5.9	57.14
AT1G47270.1	Thale cress	nucleus	56.51	55.69
PGSC0003DMT400002858	Potato	mitochondrion	57.25	54.69
PGSC0003DMT400029513	Potato	cytosol	52.83	54.29
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	39.07	53.54
PGSC0003DMT400076537	Potato	cytosol	55.77	53.16
PGSC0003DMT400061933	Potato	cytosol	54.79	52.35
PGSC0003DMT400027634	Potato	cytosol	49.63	52.06
PGSC0003DMT400018209	Potato	mitochondrion	45.21	47.67
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	20.39	42.13
GSMUA_Achr10P...	Banana	nucleus	21.13	40.95
CDY06747	Canola	cytosol, mitochondrion	55.53	39.1
Zm00001d033948_P004	Maize	cytosol	14.5	32.6
PGSC0003DMT400036862	Potato	nucleus	21.13	20.67

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102583673	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	UniProt:M0ZVX6
PFAM:PF00646	PFAM:PF01167	EnsemblPlantsGene:PGSC0003DMG400003602	PGSC:PGSC0003DMG400003602	EnsemblPlants:PGSC0003DMT400009280	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF74	SUPFAM:SSF54518	SUPFAM:SSF81383
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000296E276	RefSeq:XP_006340635.1	RefSeq:XP_006340636.1

Description

Phosphoric diester hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400003602]

Coordinates

chr2:+:40357810..40361016

Molecular Weight (calculated)

45836.1 Da

IEP (calculated)

9.976

GRAVY (calculated)

-0.360

Length

407 amino acids

Sequence
(BLAST)

001: MSLKSIVREL REMKDGIGNI SRRGTERKHW SNRTRSHIVP DVALSDPIEQ GQWANLPPEL LLDIIRRVEE SEASWPARSA LLFCASVCKS WREITKEIVK
101: TPEECGRLTF PISLKQPGPR ESPIQCFIKR DRANSVYRLY FGMTPSEDER DKLLLSAKKI RRATSTDFVI SFVADDFSRA SNMYAGKLRS NFLGTKFSIH
201: DCQPPSDAAI QQPGRLSRRF HAKQVSPRVP ACNYRVATIS YELNVLRARG PRRMHSAMHS IPLSSIQEGG SAPTPKSFPQ SFDEKSFSGP LAIAKESAMD
301: IISRSAVTAT SQELLVLKNK APRWHEQLQC WCLNFKGRVT VASVKNFQLV AAVDPSHNIP VAEQEKVILQ FGKIGKDIFT MDYRYPLSAF QAFAICLSSF
401: DTKPACE

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.