Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 3
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10578 | Canola | mitochondrion | 17.65 | 57.14 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 71.32 | 54.49 |
| GSMUA_Achr6P09030_001 | Banana | cytosol | 77.21 | 29.01 |
| VIT_04s0023g01950.t01 | Wine grape | cytosol | 81.62 | 26.88 |
| GSMUA_Achr2P22940_001 | Banana | cytosol | 71.32 | 26.43 |
| KRH76777 | Soybean | cytosol | 77.21 | 25.3 |
| VIT_18s0001g12660.t01 | Wine grape | cytosol | 77.21 | 25.24 |
| PGSC0003DMT400016310 | Potato | cytosol | 74.26 | 25.19 |
| Solyc03g033980.2.1 | Tomato | cytosol | 75.0 | 25.12 |
| PGSC0003DMT400009280 | Potato | cytosol | 75.0 | 25.06 |
| Solyc02g062670.2.1 | Tomato | cytosol | 75.74 | 25.06 |
| Solyc02g085130.2.1 | Tomato | cytosol | 75.74 | 25.06 |
| KRH15179 | Soybean | cytosol | 77.94 | 25.06 |
| Solyc04g071750.2.1 | Tomato | cytosol | 73.53 | 25.0 |
| KRH28692 | Soybean | cytosol | 75.74 | 24.88 |
| PGSC0003DMT400040088 | Potato | cytosol | 75.0 | 24.88 |
| PGSC0003DMT400058090 | Potato | cytosol | 74.26 | 24.88 |
| Zm00001d051568_P001 | Maize | cytosol | 79.41 | 24.77 |
| TraesCS6B01G300200.1 | Wheat | cytosol | 77.21 | 24.65 |
| KRH69894 | Soybean | cytosol | 75.0 | 24.64 |
| HORVU6Hr1G068970.3 | Barley | cytosol | 77.21 | 24.59 |
| Os02t0705300-01 | Rice | cytosol | 77.21 | 24.53 |
| EES07397 | Sorghum | cytosol | 77.94 | 24.48 |
| TraesCS6A01G272800.1 | Wheat | cytosol | 77.21 | 24.48 |
| TraesCS6D01G252800.1 | Wheat | cytosol | 76.47 | 24.47 |
| Zm00001d017773_P001 | Maize | cytosol | 77.94 | 24.26 |
| KRH08239 | Soybean | cytosol | 73.53 | 24.15 |
| CDY25159 | Canola | cytosol | 66.18 | 24.0 |
| CDY46301 | Canola | cytosol | 66.18 | 23.81 |
| Bra039620.1-P | Field mustard | cytosol | 66.18 | 23.81 |
| GSMUA_Achr7P13870_001 | Banana | mitochondrion, plastid | 51.47 | 23.73 |
| AT1G47270.1 | Thale cress | nucleus | 70.59 | 23.24 |
| Bra015624.1-P | Field mustard | cytosol, mitochondrion | 68.38 | 23.08 |
| GSMUA_Achr7P25250_001 | Banana | cytosol | 53.68 | 22.96 |
| KRH05837 | Soybean | mitochondrion | 76.47 | 22.91 |
| AT2G18280.2 | Thale cress | cytosol | 65.44 | 22.59 |
| GSMUA_Achr4P01150_001 | Banana | cytosol | 52.94 | 22.57 |
| CDY17028 | Canola | mitochondrion, nucleus | 65.44 | 22.53 |
| Bra040862.1-P | Field mustard | mitochondrion, nucleus | 65.44 | 22.47 |
| GSMUA_Achr3P31460_001 | Banana | cytosol | 52.21 | 22.19 |
| GSMUA_Achr9P08860_001 | Banana | cytosol, mitochondrion | 69.12 | 21.96 |
| CDY65687 | Canola | cytosol, mitochondrion | 60.29 | 21.93 |
| GSMUA_Achr8P07950_001 | Banana | mitochondrion | 60.29 | 21.58 |
| GSMUA_Achr1P11290_001 | Banana | cytosol | 63.97 | 21.43 |
| GSMUA_Achr8P32840_001 | Banana | mitochondrion | 64.71 | 21.41 |
| GSMUA_Achr3P17440_001 | Banana | cytosol | 61.76 | 20.84 |
| GSMUA_Achr10P... | Banana | mitochondrion | 52.94 | 19.46 |
| GSMUA_Achr4P10540_001 | Banana | mitochondrion | 54.41 | 19.27 |
| GSMUA_Achr11P... | Banana | cytosol | 56.62 | 18.55 |
| GSMUA_Achr9P29600_001 | Banana | cytosol, mitochondrion | 38.97 | 17.21 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 36.76 | 16.84 |
| GSMUA_Achr3P22480_001 | Banana | cytosol | 42.65 | 16.67 |
| CDY06747 | Canola | cytosol, mitochondrion | 61.03 | 14.36 |
| GSMUA_Achr1P10180_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 22.79 | 8.45 |
| Zm00001d033948_P004 | Maize | cytosol | 5.15 | 3.87 |
| GSMUA_Achr2P23070_001 | Banana | cytosol, mitochondrion | 4.41 | 3.05 |
| GSMUA_Achr10P... | Banana | nucleus | 2.94 | 1.9 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P23080_001 | EnsemblPlants:GSMUA_Achr2T23080_001 | EnsemblPlantsGene:GSMUA_Achr2G23080_001 | Gene3D:3.20.90.10 | InterPro:IPR025659 | InterPro:Tubby-like_C |
| InterPro:Tubby_C | InterPro:Tubby_C_CS | PANTHER:PTHR16517 | PANTHER:PTHR16517:SF75 | PFAM:PF01167 | PRINTS:PR01573 |
| ScanProsite:PS01200 | ScanProsite:PS01201 | SEG:seg | SUPFAM:SSF54518 | UniParc:UPI0002955411 | UniProt:M0SAE9 |
| MapMan:15.5.21 | : | : | : | : | : |
Description
Tubby-like F-box protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr2G23080_001]
Coordinates
chr2:+:21906384..21906863
Molecular Weight (calculated)
14939.9 Da
IEP (calculated)
6.740
GRAVY (calculated)
-0.063
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MQCMMHSIPI SSVQEGGSVP APSSFSSTSL NESNAPVQIN GEPLILKNKA PRWHEQLQCW CLNFRGRVTV ASVKNFQLVA AADPSCHVSP AEQEKVILQF
101: GKIGKDIFTM DYQYPLSAFQ AFAICLTSFD TKPACE
101: GKIGKDIFTM DYQYPLSAFQ AFAICLTSFD TKPACE
001: MDLSLLLPKR SWEISGGADK ISRVAMSLKN IVKNKYKAIG RRGRSHIAPE GSSVSSSLST NEGLNQSIWV DLPPELLLDI IQRIESEQSL WPGRRDVVAC
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE
Arabidopsis Description
TULP6Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.