Factsheet for HORVU6Hr1G068970.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G252800.1	Wheat	cytosol	98.36	98.82
TraesCS6B01G300200.1	Wheat	cytosol	97.89	98.12
TraesCS6A01G272800.1	Wheat	cytosol	97.89	97.44
Os02t0705300-01	Rice	cytosol	88.76	88.55
EES07397	Sorghum	cytosol	86.65	85.45
Zm00001d017773_P001	Maize	cytosol	87.12	85.13
Zm00001d051568_P001	Maize	cytosol	85.48	83.72
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	33.96	81.46
GSMUA_Achr2P23080_001	Banana	cytosol	24.59	77.21
GSMUA_Achr6P09030_001	Banana	cytosol	62.76	74.03
VIT_04s0023g01950.t01	Wine grape	cytosol	68.85	71.19
KRH76777	Soybean	cytosol	67.68	69.64
KRH28692	Soybean	cytosol	67.21	69.32
GSMUA_Achr2P22940_001	Banana	cytosol	58.55	68.12
Solyc04g071750.2.1	Tomato	cytosol	63.7	68.0
Solyc03g033980.2.1	Tomato	cytosol	64.17	67.49
PGSC0003DMT400016310	Potato	cytosol	63.23	67.33
VIT_18s0001g12660.t01	Wine grape	cytosol	65.34	67.07
PGSC0003DMT400058090	Potato	cytosol	63.47	66.75
KRH08239	Soybean	cytosol	64.64	66.67
KRH69894	Soybean	cytosol	63.93	65.94
Solyc02g062670.2.1	Tomato	cytosol	63.0	65.45
PGSC0003DMT400040088	Potato	cytosol	62.76	65.37
PGSC0003DMT400009280	Potato	cytosol	62.3	65.36
Solyc02g085130.2.1	Tomato	cytosol	62.53	64.96
KRH15179	Soybean	cytosol	63.47	64.07
Bra039620.1-P	Field mustard	cytosol	54.1	61.11
CDY46301	Canola	cytosol	54.1	61.11
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	42.39	60.94
CDY25159	Canola	cytosol	53.16	60.53
KRH05837	Soybean	mitochondrion	63.93	60.13
AT2G18280.2	Thale cress	cytosol	55.04	59.64
CDY10578	Canola	mitochondrion	5.85	59.52
HORVU5Hr1G023650.1	Barley	plastid	32.79	58.09
CDY65687	Canola	cytosol, mitochondrion	49.18	56.15
AT1G47270.1	Thale cress	nucleus	54.1	55.93
Bra040862.1-P	Field mustard	mitochondrion, nucleus	51.76	55.81
CDY17028	Canola	mitochondrion, nucleus	51.29	55.44
Bra015624.1-P	Field mustard	cytosol, mitochondrion	51.76	54.84
HORVU4Hr1G020110.3	Barley	cytosol, mitochondrion	54.57	52.95
HORVU5Hr1G040000.2	Barley	cytosol	53.86	52.39
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	23.42	50.76
HORVU1Hr1G074940.3	Barley	cytosol, mitochondrion, nucleus, plastid	53.16	50.22
HORVU3Hr1G061930.1	Barley	cytosol	40.75	48.88
HORVU3Hr1G083290.1	Barley	mitochondrion	49.65	47.22
HORVU1Hr1G076900.1	Barley	cytosol	41.45	45.97
GSMUA_Achr10P...	Banana	nucleus	21.78	44.29
Zm00001d033948_P004	Maize	cytosol	15.69	37.02
CDY06747	Canola	cytosol, mitochondrion	49.65	36.68
HORVU2Hr1G124880.1	Barley	plastid	50.12	34.46
HORVU0Hr1G001350.2	Barley	cytosol	24.59	28.15
HORVU6Hr1G029710.3	Barley	plastid	20.84	22.53

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EMBL:AK362319	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
UniProt:F2DEK2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU6Hr1G068970	EnsemblPlants:HORVU6Hr1G068970.3
InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200
ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002006019	SEG:seg	:	:

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:F2DEK2]

Coordinates

chrchr6H:+:477793481..477796749

Molecular Weight (calculated)

47293.8 Da

IEP (calculated)

9.781

GRAVY (calculated)

-0.370

Length

427 amino acids

Sequence
(BLAST)

001: MSLKSIVREL KEMRDGIGSM SRRGGVSDGR AGHGRGGSRH SWPSLWPEPQ PQPQRPGQEP QQQGQWANLP PELLIDVIQR VESSEVAWPA RRYVVACAAV
101: CRTWREVTKD VVKTLEECSR ITFPISLKQP GPRDCPVQCF VRRDRATSTY LLYLGLSPSL HGENDKLLLA ARKIRRAART SFVISLISDD FSHSSSTYVG
201: KLKPNFLGTK FTIFDSQPPC DAAVLPNNKP SKRHSKQVSP RLPLGNYNVA TVSYELTVLR NRGPRRMQCT MHSIPAVCIQ EGGKAPTPTG MVHSLDEQVS
301: TLSTSSKGKE PNIEFSSTSL TADLSGPIST SEAPLLLKNK APRWHEQLQC WCLNFRGRVT VASVKNFQLV ASVDPSLGVP AAEQEKVILQ FGKIGKDIFT
401: MDYRYPLSAF QAFAICLTSF DTKPACE

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.