Factsheet for TraesCS6D01G252800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G068970.3	Barley	cytosol	98.82	98.36
TraesCS6B01G300200.1	Wheat	cytosol	98.59	98.36
TraesCS6A01G272800.1	Wheat	cytosol	98.59	97.67
Os02t0705300-01	Rice	cytosol	89.41	88.78
EES07397	Sorghum	cytosol	87.06	85.45
Zm00001d017773_P001	Maize	cytosol	87.53	85.13
Zm00001d051568_P001	Maize	cytosol	85.88	83.72
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	34.12	81.46
GSMUA_Achr2P23080_001	Banana	cytosol	24.47	76.47
GSMUA_Achr6P09030_001	Banana	cytosol	63.53	74.59
VIT_04s0023g01950.t01	Wine grape	cytosol	69.41	71.43
KRH76777	Soybean	cytosol	68.24	69.88
KRH28692	Soybean	cytosol	67.76	69.57
GSMUA_Achr2P22940_001	Banana	cytosol	59.06	68.39
Solyc04g071750.2.1	Tomato	cytosol	64.24	68.25
Solyc03g033980.2.1	Tomato	cytosol	64.71	67.73
PGSC0003DMT400016310	Potato	cytosol	63.76	67.58
VIT_18s0001g12660.t01	Wine grape	cytosol	65.88	67.31
PGSC0003DMT400058090	Potato	cytosol	64.0	67.0
KRH08239	Soybean	cytosol	64.94	66.67
KRH69894	Soybean	cytosol	64.24	65.94
PGSC0003DMT400009280	Potato	cytosol	62.82	65.6
Solyc02g062670.2.1	Tomato	cytosol	63.29	65.45
PGSC0003DMT400040088	Potato	cytosol	63.06	65.37
Solyc02g085130.2.1	Tomato	cytosol	62.82	64.96
KRH15179	Soybean	cytosol	63.76	64.07
Bra039620.1-P	Field mustard	cytosol	54.82	61.64
CDY46301	Canola	cytosol	54.82	61.64
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	43.06	61.62
CDY25159	Canola	cytosol	53.88	61.07
AT2G18280.2	Thale cress	cytosol	55.76	60.15
KRH05837	Soybean	mitochondrion	64.24	60.13
CDY10578	Canola	mitochondrion	5.88	59.52
AT1G47270.1	Thale cress	nucleus	54.35	55.93
CDY65687	Canola	cytosol, mitochondrion	49.18	55.88
Bra040862.1-P	Field mustard	mitochondrion, nucleus	51.76	55.56
CDY17028	Canola	mitochondrion, nucleus	51.29	55.19
Bra015624.1-P	Field mustard	cytosol, mitochondrion	52.0	54.84
TraesCS2D01G122900.1	Wheat	cytosol	46.59	52.94
TraesCS4D01G110100.1	Wheat	golgi	54.59	52.73
TraesCS4D01G164200.1	Wheat	cytosol, plastid	49.65	52.23
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	53.88	52.16
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	24.0	51.78
TraesCS1D01G273200.1	Wheat	mitochondrion	54.12	50.66
TraesCS7D01G323100.1	Wheat	mitochondrion	53.18	49.34
TraesCS3D01G270500.1	Wheat	cytosol	41.18	49.3
TraesCS1D01G336400.1	Wheat	mitochondrion	43.29	48.94
TraesCS3D01G371600.1	Wheat	mitochondrion	50.35	47.66
TraesCS2D01G584900.1	Wheat	cytosol, mitochondrion	50.35	45.63
GSMUA_Achr10P...	Banana	nucleus	22.35	45.24
Zm00001d033948_P004	Maize	cytosol	15.76	37.02
CDY06747	Canola	cytosol, mitochondrion	49.88	36.68
TraesCS6D01G138700.1	Wheat	plastid	18.35	20.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	SUPFAM:SSF54518
SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS6D01G252800	EnsemblPlants:TraesCS6D01G252800.1	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:357003655..357006065

Molecular Weight (calculated)

47024.5 Da

IEP (calculated)

9.815

GRAVY (calculated)

-0.348

Length

425 amino acids

Sequence
(BLAST)

001: MSLKSIVREL KEMRDGIGSM SRRGGVSDGR AGHGRGGSRH SWPSLWPEPQ PQRPGQEPQQ QGQWANLPPE LLIDVIQRVE ASEVAWPARR HVVACAAVCR
101: SWREVTKDVV KTLEECSRIT FPISLKQPGP RDCPVQCFVR RDRATSTYLL YLGLSPSLHG ENDKLLLAAR KIRRAARTSF VISLISDDFS HSSSTYVGKL
201: KPNFLGTKFT IFDSQPPCDA AVLPNNKPSK RHSKQVSPRL PLGNYNVATV SYELTVLRNR GPRRMQCTMH SIPAVCIQEG GKAPTPTGMV HSLDEQVSTL
301: STSSKGKEPN IEFLSTSLSA DLSGPISTSE APLLLKNKAP RWHEQLQCWC LNFRGRVTVA SVKNFQLVAS VDPSLGVPAA EQEKVILQFG KIGKDIFTMD
401: YRYPLSAFQA FAICLTSFDT KPACE

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.