Factsheet for GSMUA_Achr6P09030_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	39.23	79.78
GSMUA_Achr2P23080_001	Banana	cytosol	29.01	77.21
GSMUA_Achr2P22940_001	Banana	cytosol	73.48	72.48
VIT_04s0023g01950.t01	Wine grape	cytosol	75.69	66.34
KRH76777	Soybean	cytosol	74.03	64.58
KRH28692	Soybean	cytosol	73.2	64.01
PGSC0003DMT400009280	Potato	cytosol	71.82	63.88
TraesCS6D01G252800.1	Wheat	cytosol	74.59	63.53
TraesCS6B01G300200.1	Wheat	cytosol	74.59	63.38
Os02t0705300-01	Rice	cytosol	74.59	63.08
Solyc02g085130.2.1	Tomato	cytosol	71.55	63.02
TraesCS6A01G272800.1	Wheat	cytosol	74.59	62.94
HORVU6Hr1G068970.3	Barley	cytosol	74.03	62.76
KRH69894	Soybean	cytosol	71.55	62.56
Solyc04g071750.2.1	Tomato	cytosol	69.06	62.5
KRH08239	Soybean	cytosol	70.72	61.84
PGSC0003DMT400016310	Potato	cytosol	68.23	61.6
Solyc03g033980.2.1	Tomato	cytosol	69.06	61.58
PGSC0003DMT400058090	Potato	cytosol	69.06	61.58
EES07397	Sorghum	cytosol	73.48	61.43
VIT_18s0001g12660.t01	Wine grape	cytosol	70.17	61.06
Zm00001d017773_P001	Maize	cytosol	73.48	60.87
Zm00001d051568_P001	Maize	cytosol	73.2	60.78
Solyc02g062670.2.1	Tomato	cytosol	67.96	59.85
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	48.9	59.6
CDY46301	Canola	cytosol	62.15	59.52
CDY10578	Canola	mitochondrion	6.91	59.52
Bra039620.1-P	Field mustard	cytosol	62.15	59.52
PGSC0003DMT400040088	Potato	cytosol	67.4	59.51
CDY25159	Canola	cytosol	61.33	59.2
KRH15179	Soybean	cytosol	67.96	58.16
AT2G18280.2	Thale cress	cytosol	62.15	57.11
GSMUA_Achr8P07950_001	Banana	mitochondrion	57.73	55.0
Bra015624.1-P	Field mustard	cytosol, mitochondrion	61.05	54.84
KRH05837	Soybean	mitochondrion	67.96	54.19
CDY65687	Canola	cytosol, mitochondrion	55.52	53.74
GSMUA_Achr1P11290_001	Banana	cytosol	60.22	53.69
CDY17028	Canola	mitochondrion, nucleus	58.56	53.67
GSMUA_Achr3P17440_001	Banana	cytosol	59.67	53.6
Bra040862.1-P	Field mustard	mitochondrion, nucleus	58.56	53.54
AT1G47270.1	Thale cress	nucleus	60.22	52.78
GSMUA_Achr4P01150_001	Banana	cytosol	46.41	52.66
GSMUA_Achr7P25250_001	Banana	cytosol	46.13	52.52
GSMUA_Achr3P31460_001	Banana	cytosol	45.86	51.88
GSMUA_Achr3P22480_001	Banana	cytosol	49.17	51.15
GSMUA_Achr8P32840_001	Banana	mitochondrion	57.18	50.37
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	27.07	49.75
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	42.27	49.68
GSMUA_Achr10P...	Banana	nucleus	28.18	48.57
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	56.08	47.43
GSMUA_Achr10P...	Banana	mitochondrion	47.51	46.49
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	37.85	46.44
GSMUA_Achr4P10540_001	Banana	mitochondrion	48.9	46.09
GSMUA_Achr11P...	Banana	cytosol	48.9	42.65
CDY06747	Canola	cytosol, mitochondrion	58.84	36.85
Zm00001d033948_P004	Maize	cytosol	17.13	34.25
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	20.17	19.89

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G09030_001	EnsemblPlants:GSMUA_Achr6P09030_001	EnsemblPlants:GSMUA_Achr6T09030_001	InterPro:IPR001810
InterPro:IPR025659	UniProt:M0T5F2	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200
ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF74	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000296E527	SEG:seg	:	:

Description

Tubby-like F-box protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr6G09030_001]

Coordinates

chr6:+:5993653..5995557

Molecular Weight (calculated)

40436.8 Da

IEP (calculated)

10.425

GRAVY (calculated)

-0.350

Length

362 amino acids

Sequence
(BLAST)

001: MPLKSLVREL KEMRDGMGST PRRGGGGWSG RLEPEQQQGR WANLPPELLL DVIRRVEESE VLWPARRHVL ACAAVCRSWR DITKEVVKTP EQCGRITFPI
101: SLKQPGPRDT PIQCFIRRER ATSTFLLFLG LSPSLQGQND KLLLAARKIR RATSTDFVIS LTADDFSRAS SSYIGKVRQP PHDAAMSSSN RSTRRIHSKQ
201: VSPRVPAVNY GIASISYELN VLRTRGPRRI QCTMRSIPIS SIQEGGSQPA IDDVSSTPAS APVRTNGEPL VLKNKAPRWH EQLQCWCLNF RGRVTVASVK
301: NFQLVAAVVP SYGVSPEEQE KVILQFGKIG KDIFTMDYRY PLSAFQAFAI CLTSFDTKPA CE

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.