Factsheet for GSMUA_Achr3P22480_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07950_001	Banana	mitochondrion	86.78	79.47
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	67.53	76.3
GSMUA_Achr8P32840_001	Banana	mitochondrion	84.48	71.53
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	77.3	62.85
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	27.3	53.37
GSMUA_Achr11P...	Banana	cytosol	62.36	52.29
GSMUA_Achr1P11290_001	Banana	cytosol	58.33	50.0
GSMUA_Achr6P09030_001	Banana	cytosol	51.15	49.17
GSMUA_Achr3P17440_001	Banana	cytosol	56.9	49.13
GSMUA_Achr7P25250_001	Banana	cytosol	43.39	47.48
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	40.23	47.14
GSMUA_Achr4P01150_001	Banana	cytosol	42.82	46.71
GSMUA_Achr3P31460_001	Banana	cytosol	42.82	46.56
GSMUA_Achr2P22940_001	Banana	cytosol	47.13	44.69
GSMUA_Achr2P23080_001	Banana	cytosol	16.67	42.65
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	35.63	42.03
GSMUA_Achr10P...	Banana	mitochondrion	43.68	41.08
GSMUA_Achr4P10540_001	Banana	mitochondrion	44.54	40.36
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	22.7	40.1
GSMUA_Achr10P...	Banana	nucleus	21.84	36.19
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	16.95	16.08

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr3G22480_001	EnsemblPlants:GSMUA_Achr3P22480_001	EnsemblPlants:GSMUA_Achr3T22480_001	InterPro:IPR001810
InterPro:IPR025659	UniProt:M0SGW4	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200
ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF31	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002963053	SEG:seg	:	:

Description

Tubby-like F-box protein 8 [Source:GMGC_GENE;Acc:GSMUA_Achr3G22480_001]

Coordinates

chr3:-:23454406..23458137

Molecular Weight (calculated)

39363.5 Da

IEP (calculated)

10.083

GRAVY (calculated)

-0.359

Length

348 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSFRDG FGSLSRRSFD VRLSGLIGHR RGKSQCSVQE LHDPCPVVQQ SRWASLPPEL LRDVIKRLEA SESTWPSRKY VVACAAVCRT
101: WREMCKEIVK SPEFSGKLTF PIALKQPGSR EGTIQCYIKR DKSKLTYRLY LCLSPSVLVE TGKFLLSAKR NRRTTCTEYI ISMDAANISR SSYSYIGKLR
201: SNFLGTKFVI YDTQPPYNGA ALCPPGRTSH RFSKKVSPKV PSGSYSIAQV TYELNVLGTR GPRRMHCVMY SIPASSLEPG TQEGEEENEI KERPLVLRNK
301: PPRWHEQLQC WCLNFRGRVT VASVKNFQLI SAAFAICLSS FDTKLACE

Best Arabidopsis Sequence Match ( AT1G43640.1 )
(BLAST)

001: MSFLSIVRDV RDTVGSFSRR SFDVRVSNGT THQRSKSHGV EAHIEDLIVI KNTRWANLPA ALLRDVMKKL DESESTWPAR KQVVACAGVC KTWRLMCKDI
101: VKSPEFSGKL TFPVSLKQPG PRDGIIQCYI KRDKSNMTYH LYLSLSPAIL VESGKFLLSA KRSRRATYTE YVISMDADNI SRSSSTYIGK LKSNFLGTKF
201: IVYDTAPAYN SSQILSPPNR SRSFNSKKVS PKVPSGSYNI AQVTYELNLL GTRGPRRMNC IMHSIPSLAL EPGGTVPSQP EFLQRSLDES FRSIGSSKIV
301: NHSGDFTRPK EEEGKVRPLV LKTKPPRWLQ PLRCWCLNFK GRVTVASVKN FQLMSAATVQ PGSGSDGGAL ATRPSLSPQQ PEQSNHDKII LHFGKVGKDM
401: FTMDYRYPLS AFQAFAISLS TFDTKLACE

Arabidopsis Description

TULP5Tubby-like F-box protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q944S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.