Factsheet for GSMUA_Achr3P17440_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P11290_001	Banana	cytosol	84.62	83.99
VIT_07s0104g01290.t01	Wine grape	cytosol	78.16	77.78
VIT_01s0010g01060.t01	Wine grape	mitochondrion	10.42	77.78
Os03t0351400-01	Rice	cytosol	54.34	73.99
Solyc09g074510.2.1	Tomato	cytosol	72.21	73.48
PGSC0003DMT400029513	Potato	cytosol	71.96	73.23
KXG39376	Sorghum	cytosol, plastid	71.96	72.68
Zm00001d029165_P004	Maize	cytosol, plastid	71.46	71.82
TraesCS4B01G166400.1	Wheat	cytosol, plastid	70.97	70.79
TraesCS4A01G140800.1	Wheat	cytosol, plastid	70.47	70.65
TraesCS4D01G164200.1	Wheat	cytosol, plastid	70.72	70.54
CDY55525	Canola	cytosol	69.98	70.15
CDY27467	Canola	cytosol	68.98	70.03
AT2G47900.3	Thale cress	cytosol	70.72	70.02
Bra021446.1-P	Field mustard	cytosol	69.73	69.9
KRH71532	Soybean	cytosol	68.98	69.5
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	29.53	66.85
Os07t0667000-01	Rice	cytosol	66.25	65.76
EER97690	Sorghum	cytosol	62.28	62.91
TraesCS2D01G122900.1	Wheat	cytosol	58.31	62.83
TraesCS2A01G120900.1	Wheat	mitochondrion	58.56	62.77
TraesCS2B01G141800.1	Wheat	cytosol	58.56	62.43
GSMUA_Achr2P23080_001	Banana	cytosol	20.84	61.76
GSMUA_Achr6P09030_001	Banana	cytosol	53.6	59.67
GSMUA_Achr8P07950_001	Banana	mitochondrion	55.83	59.21
GSMUA_Achr8P32840_001	Banana	mitochondrion	60.05	58.88
GSMUA_Achr3P22480_001	Banana	cytosol	49.13	56.9
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	43.18	56.49
GSMUA_Achr4P01150_001	Banana	cytosol	44.66	56.43
GSMUA_Achr7P25250_001	Banana	cytosol	44.42	56.29
Zm00001d007106_P001	Maize	cytosol	43.18	55.77
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	59.06	55.61
GSMUA_Achr3P31460_001	Banana	cytosol	42.68	53.75
GSMUA_Achr2P22940_001	Banana	cytosol	47.89	52.59
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	36.23	49.49
GSMUA_Achr11P...	Banana	cytosol	50.37	48.92
GSMUA_Achr4P10540_001	Banana	mitochondrion	46.4	48.7
VIT_01s0010g01050.t01	Wine grape	cytosol	16.13	48.15
GSMUA_Achr10P...	Banana	mitochondrion	43.42	47.3
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	34.49	46.8
VIT_00s0426g00050.t01	Wine grape	extracellular	16.63	42.14
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	18.11	37.06
GSMUA_Achr10P...	Banana	nucleus	18.61	35.71
Zm00001d029092_P001	Maize	mitochondrion	22.58	26.3
Zm00001d047019_P001	Maize	mitochondrion	22.58	26.3
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	18.11	19.89
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	12.16	17.88

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr3G17440_001	EnsemblPlants:GSMUA_Achr3P17440_001	EnsemblPlants:GSMUA_Achr3T17440_001	InterPro:IPR001810	InterPro:IPR025659	UniProt:M0SFG0
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517
PANTHER:PTHR16517:SF36	SUPFAM:SSF54518	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002955014

Description

Tubby-like F-box protein 6 [Source:GMGC_GENE;Acc:GSMUA_Achr3G17440_001]

Coordinates

chr3:-:19027760..19035077

Molecular Weight (calculated)

44956.1 Da

IEP (calculated)

9.266

GRAVY (calculated)

-0.272

Length

403 amino acids

Sequence
(BLAST)

001: MSFKSIIQDM RDELGSISRK GLEVKLGYGL RSTSRRTVHD ALGPPLVDAL SQSCWANMPP ELLRDVLTRI EEAEGWWPQR KDVVACAGVC RSWRDTMKEI
101: VKTPEVSGKL TFPISLKQPG PRDFPLQCFI RRNRSTQTYH LYLGLNEDDG KFLLAARKCR RPTCTDYLIS LHADDMSRTS ATYIGKLRSN FLGTKFTIYD
201: AQPPHAGAMI SRSHSTRGGG SEQISPKVLA GNYPVVHIAY ELNVSGSRGP RRMHCVMDSI PASAIKPGGV APTQIEFLHA SLDSFPSVPF FRSKSSRIEC
301: LSGSFSGLNE EKLVLKNKNP RWHAQLQCWC LNFRGRVTVA SVKNFQLVAS DEIGSVSQEQ EKVILQFGKV GKDLFTMDYS YPISAFQAFA ICLSSFDTKI
401: ACE

Best Arabidopsis Sequence Match ( AT2G47900.1 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.