Factsheet for GSMUA_Achr7P13870_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P31460_001	Banana	cytosol	66.78	61.56
GSMUA_Achr7P25250_001	Banana	cytosol	66.1	61.32
GSMUA_Achr4P01150_001	Banana	cytosol	65.76	60.81
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	35.59	58.99
CDY02510	Canola	cytosol	63.39	58.26
CDY25719	Canola	cytosol	64.07	57.27
GSMUA_Achr10P...	Banana	mitochondrion	69.15	55.14
GSMUA_Achr4P10540_001	Banana	mitochondrion	67.12	51.56
GSMUA_Achr2P23080_001	Banana	cytosol	23.73	51.47
TraesCS3B01G304600.1	Wheat	cytosol	61.02	51.28
Zm00001d011578_P003	Maize	nucleus	62.03	51.12
KRH27356	Soybean	mitochondrion	65.42	51.06
TraesCS3D01G270500.1	Wheat	cytosol	61.02	50.7
AT1G53320.1	Thale cress	mitochondrion	65.08	50.66
KRH21960	Soybean	mitochondrion	65.42	50.66
Os01t0674500-01	Rice	cytosol	61.02	50.56
EES03425	Sorghum	plastid	61.36	50.28
TraesCS3A01G270800.1	Wheat	cytosol	60.34	50.14
HORVU3Hr1G061930.1	Barley	cytosol	60.34	50.0
CDY45927	Canola	cytosol, plastid	63.39	49.87
CDY25863	Canola	cytosol, mitochondrion	63.39	49.6
Bra041095.1-P	Field mustard	cytosol, mitochondrion	63.39	49.6
Os05t0560400-00	Rice	cytosol	58.98	49.43
PGSC0003DMT400018209	Potato	mitochondrion	64.41	49.22
Zm00001d038691_P001	Maize	mitochondrion	61.02	49.05
EES18499	Sorghum	mitochondrion	61.69	48.92
Solyc07g062390.2.1	Tomato	mitochondrion	63.73	48.7
Bra030942.1-P	Field mustard	mitochondrion	64.07	48.21
Os05t0514300-01	Rice	mitochondrion	60.68	48.12
TraesCS1A01G333900.1	Wheat	mitochondrion	60.0	47.45
TraesCS1B01G347200.1	Wheat	mitochondrion	59.66	47.19
VIT_19s0014g01250.t01	Wine grape	mitochondrion	64.07	47.13
TraesCS1D01G336400.1	Wheat	mitochondrion	59.66	46.81
Zm00001d043895_P003	Maize	cytosol	58.98	46.03
HORVU1Hr1G076900.1	Barley	cytosol	58.98	45.19
OQU78419	Sorghum	cytosol	55.59	43.5
Os01t0759100-01	Rice	cytosol, plastid	49.83	39.95
GSMUA_Achr8P07950_001	Banana	mitochondrion	50.17	38.95
GSMUA_Achr6P09030_001	Banana	cytosol	46.44	37.85
GSMUA_Achr2P22940_001	Banana	cytosol	46.1	37.06
GSMUA_Achr8P32840_001	Banana	mitochondrion	50.51	36.25
GSMUA_Achr3P17440_001	Banana	cytosol	49.49	36.23
GSMUA_Achr1P11290_001	Banana	cytosol	49.15	35.71
GSMUA_Achr3P22480_001	Banana	cytosol	42.03	35.63
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	49.83	34.35
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	34.24	32.79
HORVU0Hr1G001350.2	Barley	cytosol	40.34	31.9
GSMUA_Achr11P...	Banana	cytosol	43.05	30.6
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	27.12	26.94
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	21.36	17.17
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	9.83	14.72
GSMUA_Achr10P...	Banana	nucleus	9.15	12.86

Protein Annotations

EnsemblPlants:GSMUA_Achr7P13870_001	EnsemblPlants:GSMUA_Achr7T13870_001	EnsemblPlantsGene:GSMUA_Achr7G13870_001	Gene3D:3.20.90.10	InterPro:IPR025659	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	PANTHER:PTHR16517	PANTHER:PTHR16517:SF50	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	SUPFAM:SSF54518	UniParc:UPI000295DDF2	UniProt:M0THC4	MapMan:15.5.21

Description

Tubby-like F-box protein 7 [Source:GMGC_GENE;Acc:GSMUA_Achr7G13870_001]

Coordinates

chr7:+:11120907..11124393

Molecular Weight (calculated)

33384.3 Da

IEP (calculated)

10.114

GRAVY (calculated)

-0.309

Length

295 amino acids

Sequence
(BLAST)

001: MLLPASLKQA GFSFQELCFS KFLFSRPYKK LLPGPRDLPI QCYIKRNKNN NTFCLYLSLT HTFMDKGKFL LAAQRFRHRA HVEYIISLNA DDMSQRSNAY
101: VGKLRSDFLG LNFKIYDSQP PFDGAEPLTN RVSRRFASKQ ISPQVPAGNF EIGQASYKFN LLKTRGPRRM LCTLQCPAEN SRKVHQKIPR ADASGSDAGS
201: VVLKNKVPRW HDHLKCWCLN FHGRVTVASV KNFQLVASSN PNRAGDGAVD VYEPVLLQFG KVGDDMFTMD YREPLSAFQA FAICLTSFGT KFACE

Best Arabidopsis Sequence Match ( AT1G53320.1 )
(BLAST)

001: MPLSRSLLSR RISNSFRFHQ GETTTAPESE SIPPPSNMAG SSSWSAMLPE LLGEIIRRVE ETEDRWPQRR DVVTCACVSK KWREITHDFA RSSLNSGKIT
101: FPSCLKLPGP RDFSNQCLIK RNKKTSTFYL YLALTPSFTD KGKFLLAARR FRTGAYTEYI ISLDADDFSQ GSNAYVGKLR SDFLGTNFTV YDSQPPHNGA
201: KPSNGKASRR FASKQISPQV PAGNFEVGHV SYKFNLLKSR GPRRMVSTLR CPSPSPSSSS AGLSSDQKPC DVTKIMKKPN KDGSSLTILK NKAPRWHEHL
301: QCWCLNFHGR VTVASVKNFQ LVATVDQSQP SGKGDEETVL LQFGKVGDDT FTMDYRQPLS AFQAFAICLT SFGTKLACE

Arabidopsis Description

TULP7Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WNG9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.