Factsheet for GSMUA_Achr1P11290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g01060.t01	Wine grape	mitochondrion	11.33	85.19
GSMUA_Achr3P17440_001	Banana	cytosol	83.99	84.62
VIT_07s0104g01290.t01	Wine grape	cytosol	79.06	79.26
Os03t0351400-01	Rice	cytosol	55.42	76.01
Solyc09g074510.2.1	Tomato	cytosol	72.91	74.75
PGSC0003DMT400029513	Potato	cytosol	72.66	74.49
KXG39376	Sorghum	cytosol, plastid	73.15	74.44
Zm00001d029165_P004	Maize	cytosol, plastid	72.91	73.82
TraesCS4B01G166400.1	Wheat	cytosol, plastid	72.17	72.52
TraesCS4D01G164200.1	Wheat	cytosol, plastid	71.92	72.28
TraesCS4A01G140800.1	Wheat	cytosol, plastid	71.43	72.14
AT2G47900.3	Thale cress	cytosol	72.17	71.99
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	31.53	71.91
Bra021446.1-P	Field mustard	cytosol	71.18	71.89
CDY55525	Canola	cytosol	70.94	71.64
CDY27467	Canola	cytosol	69.95	71.54
KRH71532	Soybean	cytosol	70.2	71.25
Os07t0667000-01	Rice	cytosol	67.24	67.24
TraesCS2D01G122900.1	Wheat	cytosol	59.85	64.97
TraesCS2A01G120900.1	Wheat	mitochondrion	59.85	64.63
TraesCS2B01G141800.1	Wheat	cytosol	60.1	64.55
EER97690	Sorghum	cytosol	63.3	64.41
GSMUA_Achr2P23080_001	Banana	cytosol	21.43	63.97
GSMUA_Achr8P07950_001	Banana	mitochondrion	57.64	61.58
GSMUA_Achr8P32840_001	Banana	mitochondrion	61.33	60.58
GSMUA_Achr6P09030_001	Banana	cytosol	53.69	60.22
GSMUA_Achr7P25250_001	Banana	cytosol	45.81	58.49
GSMUA_Achr3P22480_001	Banana	cytosol	50.0	58.33
Zm00001d007106_P001	Maize	cytosol	44.34	57.69
GSMUA_Achr4P01150_001	Banana	cytosol	45.32	57.68
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	43.6	57.47
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	59.85	56.78
GSMUA_Achr3P31460_001	Banana	cytosol	43.6	55.31
GSMUA_Achr2P22940_001	Banana	cytosol	48.03	53.13
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	36.7	50.17
GSMUA_Achr4P10540_001	Banana	mitochondrion	47.29	50.0
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	35.71	49.15
GSMUA_Achr11P...	Banana	cytosol	50.0	48.92
GSMUA_Achr10P...	Banana	mitochondrion	43.6	47.84
VIT_01s0010g01050.t01	Wine grape	cytosol	15.76	47.41
VIT_00s0426g00050.t01	Wine grape	extracellular	16.01	40.88
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	18.23	37.56
GSMUA_Achr10P...	Banana	nucleus	18.72	36.19
Zm00001d029092_P001	Maize	mitochondrion	24.38	28.61
Zm00001d047019_P001	Maize	mitochondrion	24.38	28.61
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	17.98	19.89
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	12.07	17.88

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr1G11290_001	EnsemblPlants:GSMUA_Achr1P11290_001	EnsemblPlants:GSMUA_Achr1T11290_001	InterPro:IPR001810	InterPro:IPR025659	UniProt:M0RYY8
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517
PANTHER:PTHR16517:SF36	SUPFAM:SSF54518	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002955BCA
SEG:seg	:	:	:	:	:

Description

Tubby-like F-box protein 6 [Source:GMGC_GENE;Acc:GSMUA_Achr1G11290_001]

Coordinates

chr1:-:8613906..8620350

Molecular Weight (calculated)

45129.4 Da

IEP (calculated)

9.380

GRAVY (calculated)

-0.275

Length

406 amino acids

Sequence
(BLAST)

001: MSFRSIIQDL RDELGSISRK GFELKMGHGL RSRSHRVVHD ALGPPLVGAL RQSCWANMPP ELLRDVLVRI EEGEGSWPVR KDVVACAGVC RSWRDTMKEI
101: VMTPELSGKL TYPISLKQPG PRDFPLQCFI RRNQSTQTYH LYLGLTQALA ADGKFLLAAR KCRRPTCTEY LISLDADDKS RGGGTYIGKL RSNFLGTKFT
201: VYDAQPPHAG ATVSRSQLTR IIGPKQVSPR VPAGNYPAAH IAYELNVLGS RGPRRMHCVM DSIPASAIEP GGMAPTQTEF LHNSLDSFPS VPFFRSKSYR
301: TGSLSGSVSG LKEEMLVLKN KAPRWHEQLQ CWCLNFRGRV TVASVKNFQL VASEENGSSN QEEEKVILQF GKVGKDLFTM DYCYPISAFQ AFAICLSSFD
401: TKIACE

Best Arabidopsis Sequence Match ( AT2G47900.3 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.