Factsheet for Zm00001d029092_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047019_P001	Maize	mitochondrion	99.71	99.71
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	68.21	86.13
Zm00001d007106_P001	Maize	cytosol	44.22	49.04
EER97690	Sorghum	cytosol	33.53	29.07
VIT_01s0010g01050.t01	Wine grape	cytosol	10.69	27.41
Zm00001d029165_P004	Maize	cytosol, plastid	29.19	25.19
Os07t0667000-01	Rice	cytosol	29.48	25.12
GSMUA_Achr1P11290_001	Banana	cytosol	28.61	24.38
VIT_07s0104g01290.t01	Wine grape	cytosol	28.03	23.95
TraesCS2B01G141800.1	Wheat	cytosol	26.01	23.81
TraesCS2D01G122900.1	Wheat	cytosol	25.72	23.8
TraesCS2A01G120900.1	Wheat	mitochondrion	25.72	23.67
Bra021446.1-P	Field mustard	cytosol	26.88	23.13
CDY55525	Canola	cytosol	26.88	23.13
Solyc09g074510.2.1	Tomato	cytosol	26.01	22.73
PGSC0003DMT400029513	Potato	cytosol	26.01	22.73
GSMUA_Achr3P17440_001	Banana	cytosol	26.3	22.58
CDY27467	Canola	cytosol	24.86	21.66
AT2G47900.3	Thale cress	cytosol	25.14	21.38
KRH71532	Soybean	cytosol	23.99	20.75
Zm00001d011578_P003	Maize	nucleus	21.1	20.39
Zm00001d043895_P003	Maize	cytosol	20.52	18.78
VIT_00s0426g00050.t01	Wine grape	extracellular	7.8	16.98
Zm00001d038691_P001	Maize	mitochondrion	17.63	16.62
Zm00001d002896_P001	Maize	cytosol	21.1	16.59
Zm00001d051568_P001	Maize	cytosol	20.81	16.51
Zm00001d053179_P001	Maize	cytosol	21.1	16.29
Zm00001d017773_P001	Maize	cytosol	20.52	16.25
Zm00001d038310_P003	Maize	mitochondrion	22.25	15.46
Zm00001d052765_P002	Maize	mitochondrion	19.94	15.13
Zm00001d042724_P002	Maize	mitochondrion	20.81	15.0
Zm00001d033948_P004	Maize	cytosol	6.65	12.71
Zm00001d015485_P001	Maize	plastid	7.23	6.22
VIT_01s0010g01060.t01	Wine grape	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d029092_P001	EnsemblPlants:Zm00001d029092_T001	EnsemblPlantsGene:Zm00001d029092	Gene3D:3.20.90.10	InterPro:IPR025659	InterPro:Tubby-like_C
InterPro:Tubby_C	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36	PFAM:PF01167	PRINTS:PR01573	ProteinID:ONL97889.1
SEG:seg	SUPFAM:SSF54518	UniParc:UPI0008455E9B	UniProt:A0A1D6K2H7	MapMan:15.5.21	:

Description

Tubby-like F-box protein 3

Coordinates

chr1:+:57580538..57582246

Molecular Weight (calculated)

37045.8 Da

IEP (calculated)

10.262

GRAVY (calculated)

-0.223

Length

346 amino acids

Sequence
(BLAST)

001: MVESFLLRRL PIASYAQPQP QPAAAPGFDF LSEVYGAASF AGPNAGDYGG EMGFLDIVEP KAASATLVDG ATGLGACKVE PGLAKSGGTF GAGAGAAPPA
101: ALASKKKRVE GMLSKNLMVE HRRRKRLNDR LHATVRHAQD QQGPRKAMPF SSMIQEMKGK IGAISLRGVL RFRLGGHAGA GRAPAAEPDE ASREGCWAQL
201: PFELLRMVLV RVEDQEPRWP ARSAIVPGPR DAPLKCFIRR DRAAQSYSLC LGVTDGLADD GKFLLAARKC RRPACTEYLI SLDAKNTSAG SYIGKLRSNF
301: LRTKFTVYDA HPPCARAAVS KGYMIGSAQV SPGVPARNYM VSHISY

Best Arabidopsis Sequence Match ( AT2G47900.1 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.