Factsheet for TraesCS2D01G122900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G141800.1	Wheat	cytosol	98.4	97.35
TraesCS2A01G120900.1	Wheat	mitochondrion	97.59	97.07
Os07t0667000-01	Rice	cytosol	74.87	68.97
VIT_01s0010g01060.t01	Wine grape	mitochondrion	9.89	68.52
TraesCS4D01G164200.1	Wheat	cytosol, plastid	70.05	64.85
EER97690	Sorghum	cytosol	68.98	64.66
GSMUA_Achr1P11290_001	Banana	cytosol	64.97	59.85
PGSC0003DMT400029513	Potato	cytosol	61.76	58.33
GSMUA_Achr3P17440_001	Banana	cytosol	62.83	58.31
VIT_07s0104g01290.t01	Wine grape	cytosol	63.1	58.27
Solyc09g074510.2.1	Tomato	cytosol	61.23	57.83
KRH71532	Soybean	cytosol	59.89	56.0
CDY27467	Canola	cytosol	59.36	55.92
AT2G47900.3	Thale cress	cytosol	60.43	55.53
CDY55525	Canola	cytosol	59.36	55.22
Bra021446.1-P	Field mustard	cytosol	59.36	55.22
Zm00001d007106_P001	Maize	cytosol	45.45	54.49
TraesCS3D01G270500.1	Wheat	cytosol	47.06	49.58
TraesCS6D01G252800.1	Wheat	cytosol	52.94	46.59
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	54.01	46.01
TraesCS4D01G110100.1	Wheat	golgi	53.74	45.68
TraesCS1D01G273200.1	Wheat	mitochondrion	55.35	45.59
TraesCS1D01G336400.1	Wheat	mitochondrion	45.45	45.21
VIT_01s0010g01050.t01	Wine grape	cytosol	15.78	43.7
TraesCS7D01G323100.1	Wheat	mitochondrion	53.21	43.45
TraesCS3D01G371600.1	Wheat	mitochondrion	51.6	42.98
TraesCS2D01G584900.1	Wheat	cytosol, mitochondrion	52.94	42.22
VIT_00s0426g00050.t01	Wine grape	extracellular	16.04	37.74
Zm00001d029092_P001	Maize	mitochondrion	23.8	25.72
Zm00001d047019_P001	Maize	mitochondrion	23.8	25.72
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	12.83	17.52
TraesCS6D01G138700.1	Wheat	plastid	15.51	14.87

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36	SUPFAM:SSF54518	SUPFAM:SSF81383
EnsemblPlantsGene:TraesCS2D01G122900	EnsemblPlants:TraesCS2D01G122900.1	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	SEG:seg

Description

No Description!

Coordinates

chr2D:-:71760881..71763804

Molecular Weight (calculated)

42109.7 Da

IEP (calculated)

9.983

GRAVY (calculated)

-0.339

Length

374 amino acids

Sequence
(BLAST)

001: MSFRSMVREM KGEVDAIARR RPLPSARGVR RVAAVATEEE AARQGCCWAE LPPELLREVL ARVEASEPRW PRRRDVVACA GVCRTWRGVV REIVRVPEVS
101: GRLTFPISLK QPGPRDAPIK CFIRRHRATQ TYFLYIGLTD ALADTGKFLL AARKYHRPTC TEYLISLDKT DMSKGSQTCV GKLRSNFLRT KFTVYDAHPP
201: HAGPVVSKRW PAGDYPVIQI NYEVNVLGSR GPRRMNCIME SIPVSAIEQG GTAPTQTAFP FFNPKSSRMD SSITPLSSQV ESKLVLKNKS PRWHEHLRCW
301: CLNFHGRVTV ASVKNFQLVA SDESAPANEE NDDTTLQFGK IGKDLFTLDY RYPVSAFQAF AICLSSFDTK LARE

Best Arabidopsis Sequence Match ( AT2G47900.1 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.