Factsheet for TraesCS4D01G110100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 26860054

gfp PMID: 26860054 doi

MJ Hong, DY Kim, YW Seo

Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	99.32	99.32
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	99.09	99.09
HORVU4Hr1G020110.3	Barley	cytosol, mitochondrion	98.41	98.41
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	78.18	78.36
Zm00001d053179_P001	Maize	cytosol	77.95	76.56
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	73.18	75.23
VIT_18s0072g00630.t01	Wine grape	cytosol	72.5	75.06
EES08030	Sorghum	cytosol, mitochondrion	77.5	74.78
VIT_12s0055g00460.t01	Wine grape	mitochondrion	71.59	74.29
PGSC0003DMT400061933	Potato	cytosol	71.82	74.18
Solyc04g071440.2.1	Tomato	mitochondrion	71.36	73.71
KRH10476	Soybean	cytosol, mitochondrion	71.14	73.3
PGSC0003DMT400076537	Potato	cytosol	70.68	72.83
Solyc01g104670.2.1	Tomato	cytosol	70.45	72.6
KRH43964	Soybean	cytosol, mitochondrion	70.0	72.13
Solyc10g046970.1.1	Tomato	mitochondrion	69.77	72.07
KRH08694	Soybean	mitochondrion	69.32	71.93
KRH70303	Soybean	cytosol	69.09	71.7
PGSC0003DMT400002858	Potato	mitochondrion	69.32	71.6
KRG91652	Soybean	cytosol, mitochondrion	68.86	70.47
KRH35144	Soybean	cytosol, mitochondrion	68.64	70.23
TraesCS1D01G273200.1	Wheat	mitochondrion	72.27	70.04
CDY13570	Canola	cytosol	65.45	67.76
CDY45959	Canola	cytosol	65.91	67.6
Bra040803.1-P	Field mustard	cytosol	67.73	66.67
TraesCS3D01G371600.1	Wheat	mitochondrion	67.5	66.15
AT1G76900.1	Thale cress	cytosol	67.5	65.27
CDY36119	Canola	cytosol	62.27	64.93
CDX84977	Canola	cytosol	61.82	64.76
CDY51990	Canola	cytosol	61.82	64.3
Bra024763.1-P	Field mustard	cytosol	63.64	63.93
CDY65845	Canola	cytosol, mitochondrion	65.23	63.78
CDY42119	Canola	cytosol	63.18	63.62
Bra010985.1-P	Field mustard	cytosol	63.41	63.55
TraesCS7D01G323100.1	Wheat	mitochondrion	66.14	63.54
AT1G25280.1	Thale cress	cytosol	64.09	63.37
CDX87562	Canola	cytosol, mitochondrion	64.55	62.97
CDY66464	Canola	cytosol	61.36	62.94
AT1G43640.1	Thale cress	cytosol	61.36	62.94
CDY72036	Canola	cytosol	62.95	62.53
Bra012486.1-P	Field mustard	cytosol	62.95	62.53
Bra015711.1-P	Field mustard	cytosol, mitochondrion	65.91	62.37
GSMUA_Achr11P...	Banana	cytosol	56.14	59.52
TraesCS2D01G584900.1	Wheat	cytosol, mitochondrion	62.05	58.21
TraesCS6D01G252800.1	Wheat	cytosol	52.73	54.59
TraesCS4D01G164200.1	Wheat	cytosol, plastid	50.0	54.46
TraesCS2D01G122900.1	Wheat	cytosol	45.68	53.74
TraesCS3D01G270500.1	Wheat	cytosol	40.0	49.58
TraesCS1D01G336400.1	Wheat	mitochondrion	39.55	46.28
TraesCS6D01G138700.1	Wheat	plastid	16.36	18.46

Protein Annotations

EnsemblPlants:TraesCS4D01G110100.1	EnsemblPlantsGene:TraesCS4D01G110100	Gene3D:3.20.90.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	PANTHER:PTHR16517	PANTHER:PTHR16517:SF43	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	SEG:seg	SUPFAM:SSF54518	SUPFAM:SSF81383	MapMan:15.5.21	:

Description

No Description!

Coordinates

chr4D:-:89537503..89540899

Molecular Weight (calculated)

48835.6 Da

IEP (calculated)

9.513

GRAVY (calculated)

-0.260

Length

440 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDSFGSLSRR GFDIRILGHG RGRSHGAVHE LHDPVPVIQS SCWANLPSEL LRDVIERLEA SEATWPCRKN VVACAAVCRT WREMCKEIVK
101: NPEFCGKITF PVSLKQPGPR DGTMQCFIKR DRSTQTYYLY LCLTSAVLVE NGKFLLSAKR ICRATCTEYI ISMNANSISR STDTYIGKMR SNFLGTKFVM
201: YDTQPPYNAS SVSHSGTTSR RFYSKKGSTK VPCSTYSIAQ VSYELNVLGT RGPRRMRCVM HSIPASSLEA GGSVPCQPDI IFSRSLDESF SSMPVSKSSV
301: MDHSMRFSSA RFSDVSIGGG PAIRGQALSD GEDSKDTPLI LRNKVPRWHE QLQCWCLNFR GRVTVASVKN FQLTAAVQPA AGAPTPPHPA PAPPPEHDKV
401: ILQFGKVAKD MFTMDYRYPL SAFQAFALSL SSFDTKLACE

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.