Factsheet for PGSC0003DMT400002858

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g046970.1.1	Tomato	mitochondrion	98.12	98.12
PGSC0003DMT400076537	Potato	cytosol	85.68	85.48
KRH10476	Soybean	cytosol, mitochondrion	85.21	85.01
KRH43964	Soybean	cytosol, mitochondrion	84.04	83.84
VIT_12s0055g00460.t01	Wine grape	mitochondrion	83.1	83.49
HORVU5Hr1G023650.1	Barley	plastid	44.84	79.25
PGSC0003DMT400061933	Potato	cytosol	77.0	77.0
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	75.35	75.0
CDY66464	Canola	cytosol	72.77	72.26
CDX84977	Canola	cytosol	71.13	72.14
CDY51990	Canola	cytosol	71.13	71.63
CDY36119	Canola	cytosol	70.89	71.56
CDY72036	Canola	cytosol	74.41	71.56
Bra012486.1-P	Field mustard	cytosol	74.41	71.56
CDY42119	Canola	cytosol	73.24	71.4
Bra010985.1-P	Field mustard	cytosol	73.24	71.07
AT1G25280.1	Thale cress	cytosol	74.18	71.01
Bra024763.1-P	Field mustard	cytosol	73.0	71.0
Os12t0163400-01	Rice	cytosol	73.24	70.11
TraesCS4D01G110100.1	Wheat	golgi	71.6	69.32
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	71.6	69.32
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	71.36	69.09
KXG23034	Sorghum	cytosol, mitochondrion	70.19	68.42
TraesCS5B01G123800.1	Wheat	golgi	69.72	67.65
TraesCS5A01G124100.1	Wheat	cytosol	69.72	67.65
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	69.72	67.65
Zm00001d053179_P001	Maize	cytosol	68.31	64.96
EES08030	Sorghum	cytosol, mitochondrion	68.78	64.25
GSMUA_Achr11P...	Banana	cytosol	57.04	58.55
PGSC0003DMT400040088	Potato	cytosol	56.1	58.29
PGSC0003DMT400029513	Potato	cytosol	53.29	57.32
PGSC0003DMT400009280	Potato	cytosol	54.69	57.25
PGSC0003DMT400016310	Potato	cytosol	53.76	57.11
PGSC0003DMT400058090	Potato	cytosol	53.99	56.65
PGSC0003DMT400027634	Potato	cytosol	50.94	55.93
PGSC0003DMT400018209	Potato	mitochondrion	45.54	50.26
PGSC0003DMT400036862	Potato	nucleus	21.83	22.36

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102602432	MapMan:15.5.21	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	UniProt:M0ZKS0	PFAM:PF00646
PFAM:PF01167	EnsemblPlantsGene:PGSC0003DMG400001114	PGSC:PGSC0003DMG400001114	EnsemblPlants:PGSC0003DMT400002858	PRINTS:PR01573	ScanProsite:PS01200
ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF45	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000295DC02	RefSeq:XP_006339926.1	RefSeq:XP_006339927.1	RefSeq:XP_015168824.1

Description

TLP domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400001114]

Coordinates

chr10:+:16336515..16340211

Molecular Weight (calculated)

47606.1 Da

IEP (calculated)

9.919

GRAVY (calculated)

-0.324

Length

426 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDSFGSLSRR SFDVRLSGHQ RGKSLGSFHD LSDQPPVNQN SCWANLPPEL LFDVIRRLEE SENSWPARKH VVACASVCRS WRIMCQEIVT
101: SPEVCGKLTF PVSLKQPGPR DGMIQCFIKR DKSNLTYHLF LCLSPALLVE NGKFLLSAKR TRRTTCTEYV ISMDAENISR SSNTCIGKLR SNFLGTKFVI
201: YDTQPPYTSA NIPPPGRSSR RFYSKKVSPK VPTGSYSIAQ IKYELNVLGT RGPRKMHCVM HSIPASAVDV GGSVPGQPEL LPRSLEDSFR SISFSKLLDH
301: SAEFSSSRFS DIVRASSSAE DDSKVKPLVL KNKSPRWHEQ LQCWCLNFRG RVTVASVKNF QLIAAHQPAA GGPTTSRSSQ SDHDKVILQF GKIGKDMFTM
401: DYRYPLSAVQ AFAICLSSFD TKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.