Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G25280.1 CDX68112 AT1G75950.1 12795696
AT1G25280.1 CDX73212 AT1G75950.1 12795696
AT1G25280.1 CDX80590 AT1G75950.1 12795696
AT1G25280.1 CDX85931 AT1G75950.1 12795696
AT1G25280.1 CDX87650 AT1G75950.1 12795696
AT1G25280.1 CDY13521 AT1G75950.1 12795696
AT1G25280.1 CDY39073 AT1G75950.1 12795696
AT1G25280.1 CDX68112 AT1G75950.1 25168737
AT1G25280.1 CDX73212 AT1G75950.1 25168737
AT1G25280.1 CDX80590 AT1G75950.1 25168737
AT1G25280.1 CDX85931 AT1G75950.1 25168737
AT1G25280.1 CDX87650 AT1G75950.1 25168737
AT1G25280.1 CDY13521 AT1G75950.1 25168737
AT1G25280.1 CDY39073 AT1G75950.1 25168737
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY42119 Canola cytosol 95.24 91.53
CDY36119 Canola cytosol 90.24 89.81
CDY51990 Canola cytosol 89.52 88.89
CDY66464 Canola cytosol 88.81 86.95
CDY72036 Canola cytosol 90.24 85.55
AT1G25280.1 Thale cress cytosol 90.48 85.39
CDY13913 Canola endoplasmic reticulum, extracellular 5.95 83.33
KRH10476 Soybean cytosol, mitochondrion 74.52 73.3
VIT_12s0055g00460.t01 Wine grape mitochondrion 73.81 73.11
KRH43964 Soybean cytosol, mitochondrion 74.05 72.83
PGSC0003DMT400076537 Potato cytosol 72.38 71.19
Solyc10g046970.1.1 Tomato mitochondrion 72.14 71.13
PGSC0003DMT400002858 Potato mitochondrion 72.14 71.13
Solyc01g104670.2.1 Tomato cytosol 72.14 70.96
HORVU5Hr1G023650.1 Barley plastid 39.76 69.29
GSMUA_Achr9P08860_001 Banana cytosol, mitochondrion 68.1 66.82
CDY45959 Canola cytosol 68.1 66.67
CDY13570 Canola cytosol 67.14 66.35
CDY65845 Canola cytosol, mitochondrion 68.81 64.22
CDX87562 Canola cytosol, mitochondrion 68.57 63.86
Os12t0163400-01 Rice cytosol 67.62 63.82
TraesCS5A01G124100.1 Wheat cytosol 65.95 63.1
TraesCS5D01G132000.1 Wheat cytosol, mitochondrion 65.71 62.87
KXG23034 Sorghum cytosol, mitochondrion 65.0 62.47
TraesCS5B01G123800.1 Wheat golgi 65.24 62.41
CDY10578 Canola mitochondrion 6.19 61.9
TraesCS4D01G110100.1 Wheat golgi 64.76 61.82
TraesCS4A01G209000.1 Wheat cytosol, mitochondrion 64.52 61.59
TraesCS4B01G112600.1 Wheat cytosol, mitochondrion 64.29 61.36
Zm00001d053179_P001 Maize cytosol 64.29 60.27
CDY25159 Canola cytosol 52.86 59.2
CDY46301 Canola cytosol 53.1 58.99
EES08030 Sorghum cytosol, mitochondrion 63.57 58.55
CDY27467 Canola cytosol 53.57 56.68
CDY55525 Canola cytosol 54.05 56.47
GSMUA_Achr11P... Banana cytosol 55.24 55.9
CDY02510 Canola cytosol 41.67 54.52
CDY17085 Canola cytosol, mitochondrion 50.48 53.81
CDY65687 Canola cytosol, mitochondrion 47.86 53.74
CDY25719 Canola cytosol 41.9 53.33
CDY05258 Canola mitochondrion 45.71 53.33
CDY24698 Canola mitochondrion 44.76 53.26
CDY17028 Canola mitochondrion, nucleus 49.52 52.66
CDX92589 Canola mitochondrion 44.29 49.73
CDY25863 Canola cytosol, mitochondrion 43.81 48.81
CDY45927 Canola cytosol, plastid 43.33 48.53
CDY13914 Canola mitochondrion 25.0 43.03
CDY06747 Canola cytosol, mitochondrion 49.76 36.16
CDY35067 Canola nucleus 18.81 20.31
CDY69989 Canola nucleus 18.81 20.15
CDY17084 Canola mitochondrion 0.24 0.49
Protein Annotations
Gene3D:1.20.1280.50MapMan:15.5.21Gene3D:3.20.90.10EnsemblPlants:CDX84977ProteinID:CDX84977ProteinID:CDX84977.1
InterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00142377001
InterPro:IPR001810InterPro:IPR025659PFAM:PF00646PFAM:PF01167PRINTS:PR01573ScanProsite:PS01200
ScanProsite:PS01201PANTHER:PTHR16517PANTHER:PTHR16517:SF45SUPFAM:SSF54518SUPFAM:SSF81383InterPro:Tubby-like_C
InterPro:Tubby_CInterPro:Tubby_C_CSUniParc:UPI0004EE620ASEG:seg::
Description
BnaC05g20780D
Coordinates
chrLK031839:+:1037988..1040851
Molecular Weight (calculated)
47344.9 Da
IEP (calculated)
9.831
GRAVY (calculated)
-0.385
Length
420 amino acids
Sequence
(BLAST)
001: MSFRSIVQDL RDGLGSLSKR SFDFRLHKGK SQGSCEYSSS RDLLSPLIVQ TSRWANLPPE LLLDVIKRLE ESESNWPARK HVVACAFVCR SWRAMCQEIV
101: LCPEICGKLT FPVSLKQPGP RDTMIQCFIK RDKSKLTFHL FLCLSPGTLS LENGKFLLSA KRTRRTTRTE YIISMDADNI SRSSNSYLGK LRSNFLGTKF
201: LVYDTQPPQN TPSSSSALIT DQTSRSMFHS KRVSPKLPSG SYNIAQITYE LNVLGTRGPR RMHCVMNSIP ASSLEPGGSV PNQPDKLLPN PLDESFRSNI
301: SFSKSSLDYR SEEQEETSFR PLVLKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPPTQGAAAA APSHPEQEKV ILQFGKVGKD MFTMDYRYPL
401: SAFQAFAICL SSFDTKLACE
Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)
001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE
Arabidopsis Description
TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.