CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46301	Canola	cytosol	97.87	97.09
AT2G18280.2	Thale cress	cytosol	90.13	85.79
CDY13913	Canola	endoplasmic reticulum, extracellular	6.13	76.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	31.73	66.85
GSMUA_Achr2P23080_001	Banana	cytosol	24.0	66.18
KRH28692	Soybean	cytosol	68.27	61.84
PGSC0003DMT400058090	Potato	cytosol	66.4	61.33
GSMUA_Achr6P09030_001	Banana	cytosol	59.2	61.33
Solyc03g033980.2.1	Tomato	cytosol	66.13	61.08
KRH76777	Soybean	cytosol	67.47	60.96
PGSC0003DMT400009280	Potato	cytosol	65.6	60.44
VIT_04s0023g01950.t01	Wine grape	cytosol	66.4	60.29
Solyc04g071750.2.1	Tomato	cytosol	64.27	60.25
Solyc02g085130.2.1	Tomato	cytosol	65.87	60.1
KRH69894	Soybean	cytosol	66.13	59.9
PGSC0003DMT400016310	Potato	cytosol	64.0	59.85
PGSC0003DMT400040088	Potato	cytosol	65.33	59.76
Solyc02g062670.2.1	Tomato	cytosol	65.07	59.37
KRH08239	Soybean	cytosol	65.33	59.18
GSMUA_Achr2P22940_001	Banana	cytosol	56.0	57.22
CDY65687	Canola	cytosol, mitochondrion	57.07	57.22
CDY17028	Canola	mitochondrion, nucleus	58.13	55.19
CDY10578	Canola	mitochondrion	6.13	54.76
EES07397	Sorghum	cytosol	62.67	54.27
CDY02510	Canola	cytosol	46.4	54.21
TraesCS6D01G252800.1	Wheat	cytosol	61.07	53.88
TraesCS6B01G300200.1	Wheat	cytosol	61.07	53.76
CDY17085	Canola	cytosol, mitochondrion	56.27	53.55
Zm00001d051568_P001	Maize	cytosol	62.13	53.44
Zm00001d017773_P001	Maize	cytosol	62.13	53.32
HORVU6Hr1G068970.3	Barley	cytosol	60.53	53.16
TraesCS6A01G272800.1	Wheat	cytosol	60.8	53.15
CDX84977	Canola	cytosol	59.2	52.86
CDY25719	Canola	cytosol	46.13	52.42
CDY24698	Canola	mitochondrion	48.8	51.84
CDY42119	Canola	cytosol	60.0	51.49
CDY36119	Canola	cytosol	57.33	50.95
CDY51990	Canola	cytosol	57.33	50.83
CDY05258	Canola	mitochondrion	48.53	50.56
CDY55525	Canola	cytosol	53.6	50.0
CDY27467	Canola	cytosol	52.8	49.87
CDX92589	Canola	mitochondrion	49.6	49.73
CDY66464	Canola	cytosol	56.8	49.65
CDY13570	Canola	cytosol	54.93	48.47
CDY72036	Canola	cytosol	57.07	48.31
CDY25863	Canola	cytosol, mitochondrion	48.53	48.28
CDY45927	Canola	cytosol, plastid	48.27	48.27
CDY45959	Canola	cytosol	54.93	48.02
CDY65845	Canola	cytosol, mitochondrion	54.4	45.33
CDX87562	Canola	cytosol, mitochondrion	54.4	45.23
CDY13914	Canola	mitochondrion	28.27	43.44
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	34.13	43.1
CDY06747	Canola	cytosol, mitochondrion	57.6	37.37
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	19.47	37.06
GSMUA_Achr10P...	Banana	nucleus	20.53	36.67
Zm00001d033948_P004	Maize	cytosol	13.6	28.18
CDY35067	Canola	nucleus	19.47	18.77
CDY69989	Canola	nucleus	19.47	18.62
CDY17084	Canola	mitochondrion	0.27	0.49

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078GIR7	EnsemblPlants:CDY25159	ProteinID:CDY25159
ProteinID:CDY25159.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00029072001	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF74	SUPFAM:SSF54518	SUPFAM:SSF81383
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0004EE70BC	SEG:seg	:

Description

BnaC07g03480DTubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIR7]

Coordinates

chrLK032169:+:501585..503620

Molecular Weight (calculated)

41908.3 Da

IEP (calculated)

9.506

GRAVY (calculated)

-0.324

Length

375 amino acids

Sequence
(BLAST)

001: MSFKSILRDL KEVRDGLGGI SKRTWSKSSH IAPDHTVTPS ENIPQSPWAS LPPELLHEII RRVEESEASW PARAAVVSCA SVCKSWRGIT METVRVPEQC
101: GKLTFPISLK QPGPRDLPIQ CFIKRNRATA TYILYYGLMP SETEKDKLLL AARRVRRATC TDFVISLSAK NFSRRSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPKQ ASPKLPATSY TSGSITYELN VLRTRGPRRM HCVMDSIPLS SVISEPSLVK EEVSSGETSS THKENISLDQ PLVLKNKSPR WHEQLQCWCL
301: NFKGRVTVAS VKNFQLVADI DPSLDALPEE HERVILQFGK IGKDIFTMDY RYPLSAFQAF AICISSFDTK PACEG

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.