Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016310 | Potato | cytosol | 98.0 | 97.76 |
| Solyc03g033980.2.1 | Tomato | cytosol | 94.5 | 93.1 |
| Solyc02g062670.2.1 | Tomato | cytosol | 82.25 | 80.05 |
| Solyc02g085130.2.1 | Tomato | cytosol | 81.5 | 79.32 |
| VIT_04s0023g01950.t01 | Wine grape | cytosol | 79.75 | 77.24 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 34.0 | 76.4 |
| GSMUA_Achr2P23080_001 | Banana | cytosol | 25.0 | 73.53 |
| KRH76777 | Soybean | cytosol | 76.25 | 73.49 |
| KRH28692 | Soybean | cytosol | 75.25 | 72.71 |
| KRH69894 | Soybean | cytosol | 74.25 | 71.74 |
| KRH08239 | Soybean | cytosol | 73.25 | 70.77 |
| GSMUA_Achr6P09030_001 | Banana | cytosol | 62.5 | 69.06 |
| TraesCS6B01G300200.1 | Wheat | cytosol | 68.5 | 64.32 |
| CDY25159 | Canola | cytosol | 60.25 | 64.27 |
| TraesCS6D01G252800.1 | Wheat | cytosol | 68.25 | 64.24 |
| CDY46301 | Canola | cytosol | 60.5 | 64.02 |
| Bra039620.1-P | Field mustard | cytosol | 60.5 | 64.02 |
| TraesCS6A01G272800.1 | Wheat | cytosol | 68.5 | 63.87 |
| HORVU6Hr1G068970.3 | Barley | cytosol | 68.0 | 63.7 |
| Zm00001d017773_P001 | Maize | cytosol | 68.5 | 62.7 |
| EES07397 | Sorghum | cytosol | 67.75 | 62.59 |
| AT2G18280.2 | Thale cress | cytosol | 61.5 | 62.44 |
| Zm00001d051568_P001 | Maize | cytosol | 68.0 | 62.39 |
| GSMUA_Achr2P22940_001 | Banana | cytosol | 57.0 | 62.13 |
| CDY65687 | Canola | cytosol, mitochondrion | 55.75 | 59.63 |
| Bra040862.1-P | Field mustard | mitochondrion, nucleus | 58.25 | 58.84 |
| CDY17028 | Canola | mitochondrion, nucleus | 57.75 | 58.48 |
| Bra015624.1-P | Field mustard | cytosol, mitochondrion | 58.75 | 58.31 |
| AT1G47270.1 | Thale cress | nucleus | 58.5 | 56.66 |
| CDY10578 | Canola | mitochondrion | 5.75 | 54.76 |
| Solyc10g046970.1.1 | Tomato | mitochondrion | 57.75 | 54.23 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 40.25 | 54.21 |
| Solyc09g074510.2.1 | Tomato | cytosol | 52.75 | 53.28 |
| Solyc01g104670.2.1 | Tomato | cytosol | 56.5 | 52.93 |
| Solyc04g071440.2.1 | Tomato | mitochondrion | 54.5 | 51.17 |
| Solyc07g062390.2.1 | Tomato | mitochondrion | 46.0 | 47.67 |
| Solyc01g067680.2.1 | Tomato | cytosol | 27.0 | 43.37 |
| GSMUA_Achr2P23070_001 | Banana | cytosol, mitochondrion | 20.0 | 40.61 |
| GSMUA_Achr10P... | Banana | nucleus | 20.75 | 39.52 |
| CDY06747 | Canola | cytosol, mitochondrion | 55.5 | 38.41 |
| Zm00001d033948_P004 | Maize | cytosol | 15.5 | 34.25 |
| Solyc03g117730.2.1 | Tomato | cytosol | 22.0 | 21.67 |
Protein Annotations
| MapMan:15.5.21 | Gene3D:3.20.90.10 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008289 | GO:GO:0035091 | InterPro:IPR001810 | InterPro:IPR025659 | UniProt:K4BTG5 |
| PFAM:PF00646 | PFAM:PF01167 | PRINTS:PR01573 | ScanProsite:PS01200 | ScanProsite:PS01201 | PANTHER:PTHR16517 |
| PANTHER:PTHR16517:SF74 | SUPFAM:SSF54518 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc04g071750.2 | EnsemblPlants:Solyc04g071750.2.1 | InterPro:Tubby-like_C |
| InterPro:Tubby_C | InterPro:Tubby_C_CS | UniParc:UPI0002766A1E | : | : | : |
Description
Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:K4BTG5]
Coordinates
chr4:+:58711662..58713983
Molecular Weight (calculated)
44796.5 Da
IEP (calculated)
9.785
GRAVY (calculated)
-0.359
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFKSIVREL KEMKNGIGLS RRGEVEGRHW RNRTRSHIAP DVVPFDPNQQ GQWANIPPEL LLDIVHRVEE SETSFPARTA VVYCASVCKS WREVTKEIVK
101: TPEECGRLTF PISLKQPGPR ESPIHCFIKR DRANSVFRLY FGLTPSEDMS DKLLLAAKRI RRATSTDFVI SLVSDDFSRA SSTYVGKLRS NFLGTKFTIY
201: DSQPPSDAAI QHRGRLSRRF SAKQVSPTVS ACNYSIATIS YELNVLRTRG PRRMHCAMHS IPFSSIQEGG SAPTPTSFPQ SFDERPSKAK EPAVNISSSV
301: SGPSREPLVL KNKAPRWHEQ LQCWCLNFKG RVTVASVKNF QLAAAVDPSH NIPAAVQETT ILQFGKIGKD IFTMDYCYPL SAFQAFAICL SSFDTKPACE
101: TPEECGRLTF PISLKQPGPR ESPIHCFIKR DRANSVFRLY FGLTPSEDMS DKLLLAAKRI RRATSTDFVI SLVSDDFSRA SSTYVGKLRS NFLGTKFTIY
201: DSQPPSDAAI QHRGRLSRRF SAKQVSPTVS ACNYSIATIS YELNVLRTRG PRRMHCAMHS IPFSSIQEGG SAPTPTSFPQ SFDERPSKAK EPAVNISSSV
301: SGPSREPLVL KNKAPRWHEQ LQCWCLNFKG RVTVASVKNF QLAAAVDPSH NIPAAVQETT ILQFGKIGKD IFTMDYCYPL SAFQAFAICL SSFDTKPACE
001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG
Arabidopsis Description
TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.