Factsheet for Solyc03g117730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067620.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16070.1	Solyc02g067620.1.1	AT2G04620.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036862	Potato	nucleus	96.55	94.23
VIT_09s0018g01630.t01	Wine grape	cytosol	65.76	70.82
KRH23693	Soybean	plastid	53.2	60.67
AT1G16070.1	Thale cress	nucleus	51.97	53.15
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	48.03	53.13
Bra026081.1-P	Field mustard	nucleus	50.49	52.7
CDY35067	Canola	nucleus	50.49	52.7
CDY69989	Canola	nucleus	50.49	52.3
HORVU6Hr1G029710.3	Barley	plastid	47.78	49.11
TraesCS6B01G177300.1	Wheat	plastid	47.29	48.98
Zm00001d015485_P001	Maize	plastid	48.28	48.76
KXG29622	Sorghum	plastid	48.28	46.23
TraesCS6D01G138700.1	Wheat	plastid	41.63	43.33
TraesCS6A01G149400.1	Wheat	plastid	41.87	42.5
Os02t0179400-00	Rice	nucleus	30.79	30.27
Solyc04g071440.2.1	Tomato	mitochondrion	23.4	22.3
Solyc01g104670.2.1	Tomato	cytosol	23.4	22.25
Solyc04g071750.2.1	Tomato	cytosol	21.67	22.0
Solyc10g046970.1.1	Tomato	mitochondrion	22.91	21.83
Solyc07g062390.2.1	Tomato	mitochondrion	20.69	21.76
Solyc09g074510.2.1	Tomato	cytosol	20.94	21.46
Solyc02g062670.2.1	Tomato	cytosol	21.67	21.41
Solyc03g033980.2.1	Tomato	cytosol	21.18	21.18
Solyc02g085130.2.1	Tomato	cytosol	21.18	20.92
Solyc01g067680.2.1	Tomato	cytosol	9.11	14.86

Protein Annotations

EnsemblPlants:Solyc03g117730.2.1	EnsemblPlantsGene:Solyc03g117730.2	Gene3D:3.20.90.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289
GO:GO:0035091	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C	PANTHER:PTHR16517	PANTHER:PTHR16517:SF27
PFAM:PF01167	PRINTS:PR01573	SUPFAM:SSF54518	UniParc:UPI000276787C	UniProt:K4BLS4	MapMan:15.5.21

Description

No Description!

Coordinates

chr3:-:66779750..66783039

Molecular Weight (calculated)

45826.1 Da

IEP (calculated)

9.524

GRAVY (calculated)

-0.669

Length

406 amino acids

Sequence
(BLAST)

001: MSSFKKTTNP LRSSTSYNSL YDNPLNELGQ NRSSSTVGEA LGVHLLQNQL VISDNKENSA PHKPEKSNLC DKEYDWTSKV VNNEFTRVGA DVKDSVLRPS
101: SLQLCIQKNE PDSKIGLKIW EHADDTETPN SANIWDYSDS EAAPASSWST LPNRSLLYRP LPIDIGRCTC VIVKEASQES RDGGSFYSLY TNEGQGRQNR
201: KLAIAHHRRR NGKSEFVVAQ NTKGLWGKSD DSLIGHVTAN LLGSKYQIWD QGRPNSTTKQ SKLLGAVTFM PTIATWTGSY RRIKAYIPKH QSMQLKCTAQ
301: HINGLPADWE EHMDKVNQLF SKIPHYNKVS RQYELDFRDR GRAGLRIQSS VKNFQLTMEK NGRQTILQLG RVGKAKYVMD YRYPLTGYQA FCICLASIDS
401: KLCCTL

Best Arabidopsis Sequence Match ( AT1G16070.1 )
(BLAST)

001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV

Arabidopsis Description

TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.