Factsheet for Solyc02g085130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009280	Potato	cytosol	96.59	97.54
Solyc04g071750.2.1	Tomato	cytosol	79.32	81.5
Solyc03g033980.2.1	Tomato	cytosol	79.32	80.3
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	34.06	78.65
Solyc02g062670.2.1	Tomato	cytosol	77.86	77.86
VIT_04s0023g01950.t01	Wine grape	cytosol	77.13	76.76
GSMUA_Achr2P23080_001	Banana	cytosol	25.06	75.74
KRH76777	Soybean	cytosol	73.97	73.25
KRH28692	Soybean	cytosol	72.99	72.46
KRH69894	Soybean	cytosol	72.75	72.22
GSMUA_Achr6P09030_001	Banana	cytosol	63.02	71.55
KRH08239	Soybean	cytosol	72.02	71.5
CDY46301	Canola	cytosol	60.58	65.87
Bra039620.1-P	Field mustard	cytosol	60.58	65.87
CDY25159	Canola	cytosol	60.1	65.87
GSMUA_Achr2P22940_001	Banana	cytosol	58.15	65.12
AT2G18280.2	Thale cress	cytosol	61.56	64.21
TraesCS6B01G300200.1	Wheat	cytosol	65.69	63.38
TraesCS6A01G272800.1	Wheat	cytosol	65.69	62.94
TraesCS6D01G252800.1	Wheat	cytosol	64.96	62.82
EES07397	Sorghum	cytosol	66.18	62.82
HORVU6Hr1G068970.3	Barley	cytosol	64.96	62.53
Zm00001d051568_P001	Maize	cytosol	66.18	62.39
Zm00001d017773_P001	Maize	cytosol	66.18	62.24
Bra015624.1-P	Field mustard	cytosol, mitochondrion	56.93	58.06
CDY65687	Canola	cytosol, mitochondrion	52.8	58.02
CDY17028	Canola	mitochondrion, nucleus	55.47	57.72
Bra040862.1-P	Field mustard	mitochondrion, nucleus	55.47	57.58
CDY10578	Canola	mitochondrion	5.84	57.14
AT1G47270.1	Thale cress	nucleus	55.96	55.69
Solyc10g046970.1.1	Tomato	mitochondrion	57.66	55.63
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	39.66	54.88
Solyc09g074510.2.1	Tomato	cytosol	52.31	54.29
Solyc01g104670.2.1	Tomato	cytosol	55.47	53.4
Solyc04g071440.2.1	Tomato	mitochondrion	54.26	52.35
Solyc07g062390.2.1	Tomato	mitochondrion	44.77	47.67
Solyc01g067680.2.1	Tomato	cytosol	26.52	43.78
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	20.68	43.15
GSMUA_Achr10P...	Banana	nucleus	21.17	41.43
CDY06747	Canola	cytosol, mitochondrion	54.5	38.75
Zm00001d033948_P004	Maize	cytosol	14.36	32.6
Solyc03g117730.2.1	Tomato	cytosol	20.92	21.18

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659
UniProt:K4BB27	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF74	SUPFAM:SSF54518	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc02g085130.2	EnsemblPlants:Solyc02g085130.2.1
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002769041	:	:

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:K4BB27]

Coordinates

chr2:+:48111627..48113774

Molecular Weight (calculated)

46208.5 Da

IEP (calculated)

10.135

GRAVY (calculated)

-0.356

Length

411 amino acids

Sequence
(BLAST)

001: MSLKSIVREL REMKDGIGNI SRRGTERKHW SNRTRSHIVP DVALSDQIEQ GQWANLPPEL LLDIIRRVEE SELSWPARSA LLFCASVCKS WRGITKEIVK
101: TPEECGRLTF PISLKQPGPR ESPIQCFIKR DRANSVYRLY FGMIPSEDER DKLLLSAKKI RRATNTDFVI SFVADDFSRA SNMYAGKLRS NFLGTKFSIH
201: DSQPPSDAAI QQPGRLSRRF HAKQVSPRVP ACNYRVATIS YELNVLRTRG PRRMHSAMHS IPLSSIQEGG SAPTPKSFPQ SFDEKSFSAP LAIAKESAMD
301: ISSSGISRSA VTATSQDILV LKNKAPRWHE QLQCWCLNFK GRVTVASVKN FQLVAAVDPS HNIPVAEQEK VILQFGKIGK DIFTMDYRYP LSAFQAFAIC
401: LSSFDTKPAC E

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.